Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0344 ATGGAAATGGAAGGTTTTGCTGCTTCATCAGAGAGGAGTAGTGGTGTTGGAGGTGGGTATGCTTCATCTTCTTCACTGGTTTTGGATAGGGTGAAGGGTGAGTTGGTTGAGGCACCTGTGAAATTAGAGCGCAAGGGTGTGTTCCCTGAGAGAACCATTGAAGCTTTGAAGAACCACAGTGAAGCTGAGAGGAGGAGAAGAGCTAGAATCAATGCTCACCTTGATACACTCAGAACTGTCATCCCTGCTGCTAACAAGATGGACAAAGCATCATTACTGGCTGAGGTTATTAGACATCTGAAGGAGCTGAAAACGAAWGCAGCACAAGCATGTCAAGGCCTAATGATACCAAAGGACAATGATGAATTAAGAGTTGAAGAACAAGAAGGTGGATTGAATGGCTTCCCTTATTCAATAAGAGCATCTCTATGCTGCGAATACAAACCCGGCTTGTTATCTGATATAAGACAAGCACTTGATGCMCTTCAYCTTATGATAATAAGYGCAGAGATCGCGACGTTAGGAGGCAGGATGAAGAATGTRTTTGTGATAATCAGCTGTGAAGAACAGAGCTTTGAAGATGCTGAGTATAGGCAGTTCCTGGCCGGATCGGTTCACCAAGCTCTTAGGTCTGTTCTTGATAGATTTTCTGTTTCACAGGACATCTTAGAGTCTAGAAAGAGGAGGAGAATTTCTATATTCAGTTCATCATCCTTGGAAGATTTTTTATTGAGCTAG 738 0.4282 MEMEGFAASSERSSGVGGGYASSSSLVLDRVKGELVEAPVKLERKGVFPERTIEALKNHSEAERRRRARINAHLDTLRTVIPAANKMDKASLLAEVIRHLKELKTXAAQACQGLMIPKDNDELRVEEQEGGLNGFPYSIRASLCCEYKPGLLSDIRQALDALHLMIISAEIATLGGRMKNVFVIISCEEQSFEDAEYRQFLAGSVHQALRSVLDRFSVSQDILESRKRRRISIFSSSSLEDFLLS* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0344 245 ProSiteProfiles ACT domain profile. 140 225 IPR002912 -
Amo12g0344 245 SUPERFAMILY ACT-like 142 219 IPR045865 -
Amo12g0344 245 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 5 243 - -
Amo12g0344 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 54 103 IPR011598 GO:0046983
Amo12g0344 245 PANTHER TRANSCRIPTION FACTOR BHLH30 5 243 IPR045847 GO:0003700|GO:0006355
Amo12g0344 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 56 110 IPR036638 GO:0046983
Amo12g0344 245 SMART finulus 60 109 IPR011598 GO:0046983
Amo12g0344 245 Gene3D - 50 110 IPR036638 GO:0046983
Amo12g0344 245 Pfam Helix-loop-helix DNA-binding domain 58 103 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0344 Amo-Chr12 5719301 5722190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0344 41 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 40.306 1.30e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo12g0344 HLH 2.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0344 - - lja:Lj3g3v2848980.1 370.548