Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0336 ATGTCTAAGTTAAAACAAGCATTCACCCAACTCACTCATTCTTCCACTAACAACAAGAAGAAAAAGAAGCTCTTCTTGTCTCTCTTCGCCACCCTCCTCCTCGTCGCCTCCGTGGTTGCCATAGTCGCCGGCGTAAACTCCCACAAAAACAACAACTCCTCTTCCTCCTCTTCTCTCGCACTCTCTCACCACTCCCACACCATCATCAAAAACGCTTGCAGCTCCACATTCTACCAAGACCTCTGTTTCTCGGCCGTCTCCTCCGAGCCTGGCGTGACAAACAAGGTCACTTCTCACAAAGATGTCATTGAATTGTCCCTCAACGTTACTTGCAGGACCGTCGAGCACAACTTCTTTGTTATCAAGAAGATTCTCGAGGAGCGGGAGAAGATCCTCACCCACAGGGAGAGGATCGCCCTCCACGACTGCCTTGAGACCATTGACGAGTCCCTTGACGAGCTCCATCAGGCCTACGAGGACATCAAGCTCTATCCTAACTCTAACAAGAAGACTCTCTACCAGCACGCCGATGATCTCAACACTCTTATTAGTGCCGCCATAACCAACCAGGTGACTTGCTTGGACGGTTTCTCGCACGACGCGGCGGACAAGAATGTAAGGAAGGCTCTAGAAGAAGGTCAGGTACACGTGGAGCACATGTGCAGCAACGCATTGGCTATGACGAAGAACATGACCGACACCGACATCGCAAACTACGAACAGAAAATGATGACGACGGCGACGGCGAACGGAGGAAGGAAGTTGATGATGATGGAGGAAGAAGAAGACGAGAAGGGAGTAAAGTGGCCGCAGTGGATGTCGGTTGGTGACAGGAGGCTGTTGCAGGCGGCGACGGTGAAGGCGGACGTTGTGGTGGCGGCGGACGGGAGCGGGAACTTCAAGACAGTGTCGGAGGCGGTGAAGGCGGCGCCGGAGAAGAGTAGCAAGAGGTATGTGATTAAGATCAAAGCTGGTGTATACAGAGAGAATGTTGAAGTGCCGAAGAAGAAGACGAATATAATGTTCTTGGGAGATGGAAGAACCAACACCATTATCACCGGAAGTAGAAACGTTAAAGATGGCGACACCACCTTCAACTCCGCCACCGTCGCCGTTGTGGGACCAAACTTTCTTGCAAGAGACATAACCTTCCAAAACACAGCCGGAGCAGCAAAGCACCAAGCGGTGGCACTTCGAGTCGGTGGCGACCTCTCAGCTTTCTACAACTGCGATATCCTCGCCTACCAAGACACCCTCTATGTCCACAACAACCGTCAATTCTTTGTCAATTGCCTCGTCGTGGGCACCGTCGACTTTATCTTTGGTAATTCAGCCGCAGTTTTTCAAAACTGCGACATCCATGCCCGGCGCCCTGACCCTGGTCAGAAGAACATGGTCACGGCGCAGGGCAGGGTTGACCCTAACCAAAACACCGGAATTGTGATCCAAAAATGTAGGATTGGTGCCACCACGGATTTGGAGCCTGTGAAGAAGAGTTTCCCTACCTACCTTGGTAGGCCATGGAAGGAGTACTCTAGAACCGTGATCATGCAAAGCACCATAAGCGATGTYATTCAACCTGTTGGATGGCATGAGTGGAATGGAGACTTTGCARTYYARACTRTGGTTTATAGAGAGTACCAAAATACTGGGCCTGGMGCTGGTACTTCTGCTAGGGTTAKCTGGAAGGGCTATAAGGTAATTACAAATGCTGCTGAGGCCCAGGCTTTTACAGCTGGGGCCTTCATTGGGGGTTCTAATTGGTTGGGCTCAACAGGCTTCCCTTTCTCTCTTGGGTTATAA 1803 0.508 MSKLKQAFTQLTHSSTNNKKKKKLFLSLFATLLLVASVVAIVAGVNSHKNNNSSSSSSLALSHHSHTIIKNACSSTFYQDLCFSAVSSEPGVTNKVTSHKDVIELSLNVTCRTVEHNFFVIKKILEEREKILTHRERIALHDCLETIDESLDELHQAYEDIKLYPNSNKKTLYQHADDLNTLISAAITNQVTCLDGFSHDAADKNVRKALEEGQVHVEHMCSNALAMTKNMTDTDIANYEQKMMTTATANGGRKLMMMEEEEDEKGVKWPQWMSVGDRRLLQAATVKADVVVAADGSGNFKTVSEAVKAAPEKSSKRYVIKIKAGVYRENVEVPKKKTNIMFLGDGRTNTIITGSRNVKDGDTTFNSATVAVVGPNFLARDITFQNTAGAAKHQAVALRVGGDLSAFYNCDILAYQDTLYVHNNRQFFVNCLVVGTVDFIFGNSAAVFQNCDIHARRPDPGQKNMVTAQGRVDPNQNTGIVIQKCRIGATTDLEPVKKSFPTYLGRPWKEYSRTVIMQSTISDVIQPVGWHEWNGDFAXXTXVYREYQNTGPGAGTSARVXWKGYKVITNAAEAQAFTAGAFIGGSNWLGSTGFPFSLGL* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0336 600 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 67 232 IPR035513 -
Amo12g0336 600 Pfam Pectinesterase 289 585 IPR000070 GO:0030599|GO:0042545
Amo12g0336 600 PANTHER PECTINESTERASE 19 599 - -
Amo12g0336 600 SMART PMEI_2 64 227 IPR006501 GO:0004857
Amo12g0336 600 Pfam Plant invertase/pectin methylesterase inhibitor 68 227 IPR006501 GO:0004857
Amo12g0336 600 Gene3D Invertase/pectin methylesterase inhibitor family protein 64 232 IPR035513 -
Amo12g0336 600 ProSitePatterns Pectinesterase signature 2. 433 442 IPR033131 -
Amo12g0336 600 Gene3D - 283 600 IPR012334 -
Amo12g0336 600 TIGRFAM PME_inhib: pectinesterase inhibitor domain 55 231 IPR006501 GO:0004857
Amo12g0336 600 CDD PMEI-like_3 72 232 - -
Amo12g0336 600 SUPERFAMILY Pectin lyase-like 284 599 IPR011050 -
Amo12g0336 600 PANTHER PECTINESTERASE 19 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0336 Amo-Chr12 5548239 5554717 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0336 14 600 Carbohydrate Esterase AT3G14310 68.053 0.0 795
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0336 K01051 - pvu:PHAVU_010G123100g 871.307