Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0335 ATGGACACAATCAAGTCCTTCAAGGGATACGGCAAAGTCGATGAGGCCGAGCAACAAGCCTATCAGAAGAAGACACGTAAGCGAATCATAATCCTAATCGTCTCATCACTAATCCTCTCAGCGGCGATTATTGCCGCAGTAGCAGGAATCGTCATACACAAGCGCAACACCAAATCATCATCATCATCTTCTAACTCGGTCCCAACACCCGAGTTAACTCCGGCCGCGTCACTCAAAGCGGTTTGCGATGTGACTCAGTACCCTAACTCGTGCTTCTCCGCCATCTCCGCCGTCGCAAACACCAACACTACTGATCCCAAGCTCCTCTTCCGCCTCTCCCTCGGCGTCGCCATTGACGAGCTCTCCAAGCTCGCGAAGCAGCTTCCCTCCAAGCTTCGCGAATCTACGAAGAACGATTCACGGCTCCAAAAGGCGATCGATGTGTGCGAAACCGTGCTCGACGACGCTCTAGATCGCCTAAACGAGTCGATCGGAGTCGCCGACGAAGGACGGAAGGTGCTGGCGGCGGGGAAGATAACCGATCTGGAAACATGGCTGAGCGCGGCGATAACGAACCAGGAAACGTGCATTGACGCGATCTCCGATGTGGATTCRACCGCTGAGCACGGCGTTGTCGGAGAAGTTCAAACGGCGATGAAGAACTCCACAGAGTACGCGAGCAACAGCTTGGCGATTGTGACGAGGATCTTAGGGCTGATTTCAAAGTTCGATTCGCCGGTGCACCGGCGGCGGTTACTCGGGTTTCCGGAGTGGGTGACGGCGGCGGATAGGAGGCTGCTGGCAGGGAATGTGAACGAAACGGAGACTCGTGTGGTGGTGGCGCAGGACGGAAGCGGTGACTACACCACCATCACGGCGGCGGTGAATGCCGTGAAGAAGAAGAGCTTGAAGAGGCACGTGATTTACGTGAAGACAGGAATTTACAGAGAGAACATCGATTTGGATAAGAACACTTGGAATGTGATGATCTACGGTGATGATAAGACGAAAACCATCGTCACAGGTAACCGGAACTTCATCGACGGCGTTCCTACATTTGAGACTGCCACTTTCGCCGTTAAAGGAAAGGGATTCATAGCTAAAGATATAGGTTTCATAAACACCGCAGGCGCATCGAAGCACCAAGCCGTGGCGCTCCGGTCCGGCTCAGACCGCTCCGTGTTCTACCGGTGCTCATTCATTGGCTACCAAGACACCCTATATGCCCACTCCAACCGCCAATTCTACCGTGAATGTGACATCACAGGCACCATAGACTTCATATTTGGCAATGCAGCAGTTGTGTTCCAAAGCTGCAAGATCATGCCAAGGCAGCCACTCCCWAACCAGTTCAATACCATTACAGCCCAAGGAAAGAAGGACCCTAACCAGAACACTGGCATTGTGATCCAGAAATCCACAATCACTACCCTTGATAAGGACAATCTRACTCTCACTGCCCCAACATACCTTGGTAGGCCATGGAAAGATTACTCCACCACTGTGATCATGCAATCTGAGATTGGCTCATTRTTGAAGCCAATTGGGTGGATAAGTTGGATACCCAATGTAGAACCTCCTAATACCATTTTCTATGCTGAGTACCAGAACAGTGGGCCTGGGTCAGATSTGACCCAGAGGGTTAAATGGGCTGGGTACAAGCCCACTCTCACTGATCTTGATGCAGGAAAGTACACGGTCCAGTCATTCATTCAAGGCCAAGAGTGGCTCAAAGATGCTTCTGTTCAGTTTGAGTCTACTTTATGA 1767 0.5144 MDTIKSFKGYGKVDEAEQQAYQKKTRKRIIILIVSSLILSAAIIAAVAGIVIHKRNTKSSSSSSNSVPTPELTPAASLKAVCDVTQYPNSCFSAISAVANTNTTDPKLLFRLSLGVAIDELSKLAKQLPSKLRESTKNDSRLQKAIDVCETVLDDALDRLNESIGVADEGRKVLAAGKITDLETWLSAAITNQETCIDAISDVDSTAEHGVVGEVQTAMKNSTEYASNSLAIVTRILGLISKFDSPVHRRRLLGFPEWVTAADRRLLAGNVNETETRVVVAQDGSGDYTTITAAVNAVKKKSLKRHVIYVKTGIYRENIDLDKNTWNVMIYGDDKTKTIVTGNRNFIDGVPTFETATFAVKGKGFIAKDIGFINTAGASKHQAVALRSGSDRSVFYRCSFIGYQDTLYAHSNRQFYRECDITGTIDFIFGNAAVVFQSCKIMPRQPLPNQFNTITAQGKKDPNQNTGIVIQKSTITTLDKDNLTLTAPTYLGRPWKDYSTTVIMQSEIGSLLKPIGWISWIPNVEPPNTIFYAEYQNSGPGSDXTQRVKWAGYKPTLTDLDAGKYTVQSFIQGQEWLKDASVQFESTL* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0335 588 Pfam Plant invertase/pectin methylesterase inhibitor 78 232 IPR006501 GO:0004857
Amo12g0335 588 Pfam Pectinesterase 278 573 IPR000070 GO:0030599|GO:0042545
Amo12g0335 588 Gene3D Invertase/pectin methylesterase inhibitor family protein 76 237 IPR035513 -
Amo12g0335 588 SUPERFAMILY Pectin lyase-like 277 584 IPR011050 -
Amo12g0335 588 ProSitePatterns Pectinesterase signature 2. 421 430 IPR033131 -
Amo12g0335 588 TIGRFAM PME_inhib: pectinesterase inhibitor domain 64 234 IPR006501 GO:0004857
Amo12g0335 588 SMART PMEI_2 73 232 IPR006501 GO:0004857
Amo12g0335 588 CDD PMEI-like_3 80 236 - -
Amo12g0335 588 Gene3D - 271 588 IPR012334 -
Amo12g0335 588 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 78 237 IPR035513 -
Amo12g0335 588 PANTHER PECTINESTERASE 1-RELATED 8 585 - -
Amo12g0335 588 ProSitePatterns Pectinesterase signature 1. 302 321 IPR018040 -
Amo12g0335 588 PANTHER PECTINESTERASE 8 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0335 Amo-Chr12 5541062 5545303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0335 1 577 Carbohydrate Esterase AT1G53840 56.081 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0335 - - gmx:100784642 850.892