Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0321 ATGTTTCAGTTTCATCCACAAGGAACTCAAAAACAGAGTTGTACTCTGCTTGCTGTCACCGGTGGCTCTGAGCAGAAGCTGCCACCACCACAGGATCAGCTCAATTATCCATTCCCTCAGCTGGTTTCTTCAGGGCGTCTTGAGGTTCAAGTCCTGAGCAATCCTGATAAGGAGCAGTTTCGGAAAGTTCTGGATACATATCAGCCAAATTTTGTTTACTTACAAGGGGAGCAGCTAGCCAATGGTGAAGTTGGTTTGCTGGTTTGGCAGGGTGTGAAATTGTCTAATCCTGACGATATAACAGAGCTCTTTGGTTCCACATTGCCAACTGCTGTTTATTTAGAAATACCAAATGGAGAAGATTTTGCAGAGGCTCTTCATGTTAAGGGAATTCCGCATGTGATATTCTGGAAGAATGCGTTTTCTTATTTTGCTGCKTGCCATTTTCGTCAAGCATTTCTTTCAGTGGTCCAGAGTTCATCTACACATACATGGGATGCTTTCCATCTTGCACGTGCCTCTTTTGAGTTTTACTGTGTTCAAAACAYCCATGTACTTCCTACRGACAGCAATGATGCTGATAGTGAGATGGGGCCACACCTTATGGGTGACTGTCTCAAAATTAACATTGACCCTCCTGAGGTGGCRGAAGAAGATGACGACGATGATGAAAATTCCTCAGGCGATCTTCCTGCTATAAAGATACATGATGATGAAGTGAACTTGAGATTTCTCATTTGTGGTGCACCTTCTGGCGTTGACGAGTCATTGCTGAGATCTTTGGAGGATGGACTCAGTGCTCTCTTAACTATTGAAATCCGTGGTTGCAAGCTCCATGGCAAGTTTAGTGCACCCCCACCACCTCTTCAGGCAGCTGCTTTTTCTCGTGGAGTTGTTACCATGCGATGTGATATATCTACCTGTAGTTCAGCACATATCTCTCTTCTGGTATCAGGCAGTGCACAAACGTGTTTCAACGATCAGCTCTTGGAGAGTCATATAAAAAATGAAATAATTGAGAAGAGTGAAATAGTTCATGCACAACTCAACGACGGGAACAAACAGAGTTCTTCCGAACCTCGCAGATCTGCTTCAATTGCTTGTGGAGCACCTGTATTTGAAGTTTGCATGAAGCTTCCTCAATGGGCCTTGCAGATTTTGAGACAGCTAGCACCTGATATTTCTTATCGAAGTTTAGTTGCACTTGGCATTGCTAGTATTCAGGGGTTGCCTGTAGCATCTTTTGAGAAAGATGATGCTGAGCGCTTACTTTTCTTCTATCAAGGCTGTGATAAAGATAGCTATGCAAACAATACGATTTTCAGCAGTCCTCCTGGTTGGTTGAAACCACCCCCTCCTACTAGAAAGAGGTATGAACCAACCCAAGGAGCAAGTCTTGCCCTTCATGATGGCGCCTTTGCAGGGGATGGTGCTGTTCGAAAAGTAGARGAAGAAGAAAGGGATGGGAAAATGGCAAATGGGATCAGCACACCCTTAACTCCAGCRAGGCAGAGATTGAAAGTATCAGCAATGAGGCCAATTCCTCATGTTCGTCGCCATAGAATGACACCTTTTAGTGGACCTTCTCAGACAGATGGTTTTGATGGTGCCCCYGTTGAGCCTCATTTGCCTATTGTTGTCCCTGCAAAGAGGAGTAGCATTGGATCAACTTCTGCATCACAGAGAAAATCATTTTTAGGAGCCGCCCAGTCTAAGCAGGTTATTTCATTGAACCCATTGCCTTTGAAGAAACATGGTTGTGGCAGAGGCCCAGTACAGACCTGCTCTGAGGAGGAATTTCTTAAAGATGTCATGGAGTTTTTAATTATTCGGGGACATAACCGATTGATTCCCCAAGGAGGCCTTGCCGAGTTCCCTGATGCTATACTCAATGGAAAACGCCTTGATCTTTACAACTTGTATAAAGAGGTGGTTACCAGGGGAGGATTTCATGTTGGCAATGGCATCAACTGGAAAGGACAAATCTTCTCAAAGATGCGCAATTACACAACCACCAATAGAATGACTGGAGTTGGAAATACACTTAAAAGACATTATGAAACCTACCTTTTAGAATATGAATTAGCACATGATGATGTGGATGGGGAGTGCTGCTTGTTGTGTCACAGTAGTGCAGCTGGGGATTGGGTGAATTGTGGTATATGTGGRGAGTGGGCGCACTTTGGATGTGACAGAAGACAGGGGRTAGGGGCATTCAAGGATTATGCAAAAACAGATGGGCTAGAATATATATGTCCTCACTGTAGTGTTACAAATTTCAAGAAGAAACAAAGTGTTGCTAATGGGTATTCTCAAGGGTCAATGTCGTCGCGACCCCTTTGA 2343 0.44 MFQFHPQGTQKQSCTLLAVTGGSEQKLPPPQDQLNYPFPQLVSSGRLEVQVLSNPDKEQFRKVLDTYQPNFVYLQGEQLANGEVGLLVWQGVKLSNPDDITELFGSTLPTAVYLEIPNGEDFAEALHVKGIPHVIFWKNAFSYFAACHFRQAFLSVVQSSSTHTWDAFHLARASFEFYCVQNXHVLPTDSNDADSEMGPHLMGDCLKINIDPPEVAEEDDDDDENSSGDLPAIKIHDDEVNLRFLICGAPSGVDESLLRSLEDGLSALLTIEIRGCKLHGKFSAPPPPLQAAAFSRGVVTMRCDISTCSSAHISLLVSGSAQTCFNDQLLESHIKNEIIEKSEIVHAQLNDGNKQSSSEPRRSASIACGAPVFEVCMKLPQWALQILRQLAPDISYRSLVALGIASIQGLPVASFEKDDAERLLFFYQGCDKDSYANNTIFSSPPGWLKPPPPTRKRYEPTQGASLALHDGAFAGDGAVRKVEEEERDGKMANGISTPLTPARQRLKVSAMRPIPHVRRHRMTPFSGPSQTDGFDGAPVEPHLPIVVPAKRSSIGSTSASQRKSFLGAAQSKQVISLNPLPLKKHGCGRGPVQTCSEEEFLKDVMEFLIIRGHNRLIPQGGLAEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGXGAFKDYAKTDGLEYICPHCSVTNFKKKQSVANGYSQGSMSSRPL* 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0321 780 SMART bright_3 595 699 IPR001606 GO:0003677
Amo12g0321 780 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 770 - -
Amo12g0321 780 CDD PHD_ARID4_like 704 755 - -
Amo12g0321 780 MobiDBLite consensus disorder prediction 520 541 - -
Amo12g0321 780 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 770 IPR042293 -
Amo12g0321 780 SUPERFAMILY FYVE/PHD zinc finger 690 758 IPR011011 -
Amo12g0321 780 SMART ARID_2 591 694 - -
Amo12g0321 780 Gene3D - 590 704 IPR036431 GO:0003677
Amo12g0321 780 ProSiteProfiles ARID domain profile. 594 698 IPR001606 GO:0003677
Amo12g0321 780 Pfam ARID/BRIGHT DNA binding domain 597 694 IPR001606 GO:0003677
Amo12g0321 780 SUPERFAMILY ARID-like 594 709 IPR036431 GO:0003677
Amo12g0321 780 CDD ARID 596 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0321 Amo-Chr12 5405227 5412567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0321 4 769 ARID Transcription Factor Family AT3G43240 59.871 0.0 929
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Amo12g0321 ARID 3.1e-14 CL0123