Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0317 ATGGAGGGAAGTTCTTCTTCTTCTTCTTCTTCTTCTCTCTCAAAGTCTTTTTCTGATGTAGATGATTCACTACTCTTAGTTGATGATTTCTACTTTTCAGCCCTCTTTGATTCTGAAGAATTATTCCCAATCAATGATGAGAAATATGCAGAGGAACTACATTTACAAGAGGCTCTATATTCTTCTGCTATAAGCCTCAAGAGAAAACTCAAAGAGGTTCATTCTGAATCTTCTACTCATCAATCTCATCATCGTCATCATTATCTTCGTGATGATCAAGTAGTCTTGTGTGCTATTTGCATGGATTCAAAACCATCCAAAGAGATTTTCATCAACCAAAACTGCAACCACTCATTCTGTGATGAATGCATTGCAAAATATGTAGCTGCAAAGATTCAAGAGAATATATCACATGTGAAGTGTCCTGAACCAAAATGCAGAGAAATCATGGAGCCTCAGAATTGCATGTCAATAATTCCAAAGGAAGTGTTTGAAAGATGGGAGAATGCACTTTGTGAGAATCTGGTTCTTGCAACATCAAAGAAATTCTATTGCCCTTTCAAGGATTGTTCAGCAATGTTGGTGAATGATGATGGGAGTGAAGTTGTGACTTGTTCTGAGTGTCCAAATTGTCATAGATTGTTCTGTGCACAGTGTAAAGTTCCATGGCATGGTGGAATGGAATGTGGTGAGTTTATGAGTTTGAATGAAAATGAAAGAGAGAAGGAAGATCTTATGGTGATGAATCTTGCAAAGGATAAGAGATGGAGAAGGTGTTCTAAATGCAGATTCTATGTTGAAAAAAATCAGGGATGTTCACACATTTCTTGCAGGTGTGGCCATCAATTCTGTTATGCTTGTGGAAAGCCATGGAATCAGTACCATGGTTGTACATAA 897 0.3746 MEGSSSSSSSSSLSKSFSDVDDSLLLVDDFYFSALFDSEELFPINDEKYAEELHLQEALYSSAISLKRKLKEVHSESSTHQSHHRHHYLRDDQVVLCAICMDSKPSKEIFINQNCNHSFCDECIAKYVAAKIQENISHVKCPEPKCREIMEPQNCMSIIPKEVFERWENALCENLVLATSKKFYCPFKDCSAMLVNDDGSEVVTCSECPNCHRLFCAQCKVPWHGGMECGEFMSLNENEREKEDLMVMNLAKDKRWRRCSKCRFYVEKNQGCSHISCRCGHQFCYACGKPWNQYHGCT* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0317 298 ProSitePatterns Zinc finger RING-type signature. 115 124 IPR017907 -
Amo12g0317 298 SMART ibrneu5 165 229 IPR002867 -
Amo12g0317 298 SMART ibrneu5 239 297 IPR002867 -
Amo12g0317 298 Pfam Zinc finger, C3HC4 type (RING finger) 97 142 IPR018957 GO:0046872
Amo12g0317 298 Gene3D - 232 298 - -
Amo12g0317 298 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 27 297 - -
Amo12g0317 298 SUPERFAMILY RING/U-box 91 174 - -
Amo12g0317 298 SUPERFAMILY RING/U-box 240 297 - -
Amo12g0317 298 Gene3D - 183 231 - -
Amo12g0317 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 180 IPR013083 -
Amo12g0317 298 Pfam IBR domain, a half RING-finger domain 250 297 IPR002867 -
Amo12g0317 298 Pfam IBR domain, a half RING-finger domain 165 229 IPR002867 -
Amo12g0317 298 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 27 297 IPR031127 GO:0004842|GO:0016567
Amo12g0317 298 SUPERFAMILY RING/U-box 165 232 - -
Amo12g0317 298 ProSiteProfiles Zinc finger RING-type profile. 97 145 IPR001841 -
Amo12g0317 298 ProSiteProfiles TRIAD supradomain profile. 93 298 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0317 Amo-Chr12 5353703 5355131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0317 95 296 C3H Transcription Factor Family AT2G31770 28.708 1.15e-20 90.1