Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0311 ATGTGTGGAGGTGCTATTATCTCCGACTTCATTCCCGGCGGTTCCGCCGCCGCGGCGTCGCGTTCACGGCGGGTTACGGCGGACATCCTGTGGCCAAACCTGAGGAAGCCAGTGAGCAAGTCCGGCAAGAGGAGGGGCGGTGCCGGCGCCGGTGTGGTGGCGGTTGATGATGACTTTGAGGCTGATTTCAGAGAGTTTAAGGATGACTCTGACATCGACGAGGACGAGGATTATGATGTTGATGATGTCGTTGGCGGTGGTTCTGTCAAGGGTTTTGGATCATTCGGTTCAACCAAAACCGCAAAGCCTCAGCTCAAAGCTCGTGGACCTGCTGCTGTGAAATCCATGGAGCCAAGTGGACAGGTTGAGAAATCTGCTAAGAGAAAGAGGAAGAACCAGTTTCGGGGAATCCGTCAGCGTCCATGGGGGAAATGGGCGGCTGAGATCCGCGACCCGAGAAAGGGTGTTCGTGTCTGGCTTGGGACATTCAGCACTGCTGAAGAAGCCGCAAGGGCTTATGATGCTGAAGCAAGGAGGATCCGTGGCAAGAAAGCCAAGGTGAACTTCCCTGAGGAGGTTCCAGCCGCGTCCTCAAAGAGGTTCAAGCCACATCCCGAAATGCAGCTCCCTAAGGAGAAAATGAACTGTGCTAAGCCCAAACTGAACAACCAGATGTTTGACTTTGGTAACGAACTCGGGGACTTCTACTCTCAGTTGGATCAGGTGGAACAGAAGCCTCTGATTAACCAATATGCTAACATGGAGTCATTCCCCGGAAATGGACTTTTAAATGCATCTGATGATGTGGCTGCTTATTTCACTTCAGAACACTCGAGCAATTCATTTGAGTATTCCGACCTTTCATGGGGCGAGCAGGGCCCGAAGACTCCCGAGATATCATCCATGCTCTCGGCTCCCGTCGAAGTGCAGGGTGTGGCTAAGCAAGAGAAGAACATGGTGCAGCCTAACAACACTCAAGCTGACTCTGCAAAGACACTATCCGAGGAGCTTGCAGATATGGAATCACAGCTGAAGTTCTTCGATACTCCTTACCTCGATGCAAGCTGGAACGATACTTCATTGGAATCCTTCCTTGGTGTGGACTCAACACAGGATGTTGGAAACCCAATGAACCTTTGGAGCTTCGATGACCTCCCTTCCGTGGGAGGCGGAGTCTTCTAA 1182 0.5212 MCGGAIISDFIPGGSAAAASRSRRVTADILWPNLRKPVSKSGKRRGGAGAGVVAVDDDFEADFREFKDDSDIDEDEDYDVDDVVGGGSVKGFGSFGSTKTAKPQLKARGPAAVKSMEPSGQVEKSAKRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFSTAEEAARAYDAEARRIRGKKAKVNFPEEVPAASSKRFKPHPEMQLPKEKMNCAKPKLNNQMFDFGNELGDFYSQLDQVEQKPLINQYANMESFPGNGLLNASDDVAAYFTSEHSSNSFEYSDLSWGEQGPKTPEISSMLSAPVEVQGVAKQEKNMVQPNNTQADSAKTLSEELADMESQLKFFDTPYLDASWNDTSLESFLGVDSTQDVGNPMNLWSFDDLPSVGGGVF* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0311 393 Gene3D AP2/ERF domain 132 192 IPR036955 GO:0003700|GO:0006355
Amo12g0311 393 PRINTS Ethylene responsive element binding protein signature 134 145 IPR001471 GO:0003700|GO:0006355
Amo12g0311 393 PRINTS Ethylene responsive element binding protein signature 156 172 IPR001471 GO:0003700|GO:0006355
Amo12g0311 393 SUPERFAMILY DNA-binding domain 133 191 IPR016177 GO:0003677
Amo12g0311 393 ProSiteProfiles AP2/ERF domain profile. 133 190 IPR001471 GO:0003700|GO:0006355
Amo12g0311 393 CDD AP2 133 191 IPR001471 GO:0003700|GO:0006355
Amo12g0311 393 PANTHER DNA-BINDING DOMAIN 1 387 IPR044808 GO:0003700|GO:0009873
Amo12g0311 393 MobiDBLite consensus disorder prediction 100 136 - -
Amo12g0311 393 PANTHER EREBP TRANSCRIPTION FACTOR 1 387 - -
Amo12g0311 393 Pfam AP2 domain 134 182 IPR001471 GO:0003700|GO:0006355
Amo12g0311 393 SMART rav1_2 133 196 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0311 Amo-Chr12 5174462 5177404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0311 1 393 AP2-EREBP Transcription Factor Family AT3G14230 44.337 4.03e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Amo12g0311 AP2 8.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0311 K09286 - gmx:100818646 419.468