Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0308 ATGATGAGTAACAACAACATCATTAGCAACAACAACATTGGTGAAAGAGGAGGAGGGCAATTTGGGGACACCACTCTCACCAAGGTGTTTGTTGGAGGTTTGGCATGGGAGACTCCTAAAGAGGCACTTAGACAACACTTTGAGAAGTACGGCGAAATCCTCGAAGCCGTCATCATCTCCGACAAGCTCACCGGCAGATCCAAAGGCTATGGCTTTGTGACATTCAAGGAGGCAGAGGCCGCAAAGAAGGCATGCGAGGAGCAAGCAAGTTTGGTTATCAATGGACGCAAAGCTAACTGTAATCTTGCTTCCCTTGGAGCTCGTCGCCCTAGGTCTAATAATTCTTCACCACCCCCACAACCAAAAGGTGCAGAAGGATCCAACGGTGGAGGAGGAAGGAACAACGGATCAAGCACTCCATCAGGTAATCACGTGCAGTGGTATTATCCTGTGGGTGCACCTCCATCGCCATACCACCACCATCATCATCATCCGACCGTTCCTTTTTATGGGTACCCTACTACTCCTACCTACATTGCAACTGACATGATGAATTACAATTACAATCAGAAAATGGGCTACGGTGGGGCCTACATGAGTGGTGCCCACTTGTCTCATGTGTACCCGAGGCATGCTATGGTGGGTGCGAACACACTGATGCCAATGTACCCTCTGTATCACTATCACCATCCAACGGAGACAATGGGCGTCCCTGCTCACTACTACCATCCAACAGTGACTACTGGACACTACGCTGCTGCACTGCCAGCTGGCATCGTATCCAAGCCCGCATCCATGGACTCCTCATACAGGTACAGTTGGAAGTGTTGA 831 0.4994 MMSNNNIISNNNIGERGGGQFGDTTLTKVFVGGLAWETPKEALRQHFEKYGEILEAVIISDKLTGRSKGYGFVTFKEAEAAKKACEEQASLVINGRKANCNLASLGARRPRSNNSSPPPQPKGAEGSNGGGGRNNGSSTPSGNHVQWYYPVGAPPSPYHHHHHHPTVPFYGYPTTPTYIATDMMNYNYNQKMGYGGAYMSGAHLSHVYPRHAMVGANTLMPMYPLYHYHHPTETMGVPAHYYHPTVTTGHYAAALPAGIVSKPASMDSSYRYSWKC* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0308 276 MobiDBLite consensus disorder prediction 105 146 - -
Amo12g0308 276 MobiDBLite consensus disorder prediction 130 145 - -
Amo12g0308 276 PANTHER GEO13361P1-RELATED 17 264 - -
Amo12g0308 276 SMART rrm1_1 28 101 IPR000504 GO:0003723
Amo12g0308 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 97 IPR000504 GO:0003723
Amo12g0308 276 MobiDBLite consensus disorder prediction 106 122 - -
Amo12g0308 276 PANTHER RNA-BINDING PROTEIN ARP1-RELATED 17 264 - -
Amo12g0308 276 SUPERFAMILY RNA-binding domain, RBD 24 135 IPR035979 GO:0003676
Amo12g0308 276 CDD RRM_RBM24_RBM38_like 27 103 - -
Amo12g0308 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 105 IPR000504 GO:0003723
Amo12g0308 276 Gene3D - 17 146 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0308 Amo-Chr12 5099001 5103260 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0308 23 104 C2H2 Transcription Factor Family AT2G19380 45.122 4.53e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0308 - - lang:109337745 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0308 12 5099001 5103260 Amo12g0308 12 5099001 5103260 ECH