Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0304 ATGACACAAGCTTCTTGTTTTAATTTGATGGTATCTGTTATTGTATTGCCTTTGATTCTCTCCTTGTTTTTGATTGATCAAGTTTCATGTTGTAACAAGAATGATAGAGATTCTTTATTGGCCTTGTATGGCAACATATCAATCTCTTCCACACATGCTTCTCTCAATTGGTCAAATTCTTCTGATTGCTGCAAATGGGAAGGGATTACCTGTGATTTGGATCTCAGAGTCACACATCTTGAGCTTCCATTTAGAGGATTATTCGGACGAATTTCGCCATCTCTGACCGGTCTTGAAGGTCTATCATACCTTAATCTGTCACATAATCAGTTATCTGGTAACCTCCCTGACCACCTATACCAACTGTTTGATCATTTGCTTGTTCTTGATTTAAGCTATAATAGGCTTTCTGGTGAATTGCCAGAATCACCCTTTGTTGATAGTAACAAAACTAGCAATAGAAATACAAATACAAGTGTTGTGATTCAGGAGATTGATTTGTCTAGTAATTTGTTCAATGGAACATTGAAACATTCTCTCATTCAGCATATAGCAGGAGGAGGGAATTTGGTGTATTTCAATGTTAGCAATAACAGCTTCACAGGTCAAATTCCAACTTCACTCTTTTGCATCAATGATCATAACTCCTCGGCTTTGAGATTCCTGGACTTTTCCTACAATGATTTTGGTGATACTATTCAGCCAGGGCTCGGAGCGTGTTCAAAGCTCGAGAAGTTTAGAGCAGGATTCAATGAACTAACTGGGAATCTCCCAGTTGATGTCTTTGATGCTGTTTCTTTGACAGAAATCTCTTTGCCCCGGAACAAGCTTGGTGGAACAATCGACAATGGCATTGTTCGCCTCACCAACCTCACAGTTTTGGAGCTATACTCCAATAATTTAACAGGAAAAATTCCACCAAGGATTGGTGAACTCATCAAATTGCAGAGTTTGCTCCTTCATGTTAACAACTTGACTGGTACCTTGCCCCAATCTATGATGAACTGTGCCAATCTTCTTGTGTTGAATTTAAGGGTCAACTTATTGGAAGGGAATCTCTCAGCGTTCAACTTCTCAAGATTCCTTAAACTCACAACACTTGATCTTGGCAACAATAACTTCAGTGGCATCTTGCCACCAACACTCTATGCATGCAAGAATCTTACAGCTGTGAGATTAGCGTTCAATAATCTCGAGGGACAGATTTCGCATGAGATTATTGGCCTTCAATCCCTTTCTTTCCTAGCAGTTTCAAGGAACCAGCTGCAAAACATCACGGGGGCTCTGCGAATTCTCACAGGGCTAAAGGAGCTTAAAACTCTGATGCTCTCAAAAAATTTCTTCTATGAAAAGTTACCTAGTGATGTTGACATAGCAGACACAGGTGGATTCCAGAAGCTCCAAGTTTTAGGACTTGGAGGTTGTAGTTTCACCGGCGAAATACCAGGCTGGCTTGTGAACCTGACAAAGCTTGAGGTCTTGGACCTGTCCTTTAACGAAATCAGTGGTTCGATTCCTCCCTGGTTAGGTACACTTCCTCAGCTTTTCTACCTGGACTTGTCTGTTAACCACCTTACAGGAATATTTCCTATTGAGCTTACAAGGCTGCCAGCACTGATATCACAACAGGCGAATGATAAAGTCGAAAGAGCTTACTTGGAGTTACCGGTTTTTGCCGATGCCAACAATGTTTCCCAGATGCAATATAATCAGCTTTCCAATCTGCCACCAGTGATGTATCTGGGACGGAACAGACTCAGTGGCAGTATTCCAATTGAGATTGGAAATTTGAAGGTCCTTCATCAGCTGGATTTGAAGAGCAACAACTTCTCTGGCAATATACCATCTGAGATTTCAAGCTTGGTTAACTTGGAGAAACTAGACCTCTCCGGAAACCATTTATCTGGCGAAATTCCTGATTCGCTCAAGGTGTTGCATTTCTTGTCTTTCTTCAGTGTAGCAAACAATAATCTCCAAGGACGGATACCAACTGGTGGACAATTTGATACATTCTCCTCCTCCAGCTTTGAAGGGAATGCGCAATTGTGTGGCACAGTGATTCAGCGCTCTTGTCCTACTCAACAGAATTCTAACAGCACTGAAGCTCATCGCGGCACAAACAGAAAAGTAATATTAGGACTTATTATTGCAGTGTGTTTTGGCACTGGTTGCATCATGACAGTGCTGACACTTTGGATACTCTCCAAGAGAAGGATCAATCCCGGAGAAGACCATGACAAGATCGAACTTGGATCGGTTTCTCCATACTCCAACAGTGGTGTTCATCCTGAGGTTGACAAGGAGGCCAGCCTAGTGGTATTGTTCCCAAACAAAGCGAACGAAACCAAGGATCTTACCATATTTGAGATCTTGAAAGCAACTGAGAATTTCAGCCAGGCGAACATAATAGGATGTGGTGGATTCGGTTTGGTTTACAAGGCAACATTACCAAATGGAATTACACTAGCCATCAAGAAGCTTTCAGGGGATTTAGGCCTCATGGAGAGGGAATTTAAGGCAGAGGTAGAGGCTTTGTCCACAGCACAACATGAGAATCTGGTGGCACTGCAAGGCTATTGTGTCCATGATGGATTTCGGCTTCTGATGTATACTTACATGGAGAATGGAAGTCTTGATTACTGGCTGCATGAAAAGGCGGATGGCGCTTCTCAACTCGATTGGCCGACTCGTTTAAAGATTGCACAAGGGGCAAGCTGTGGTTTGGCCTATTTGCATCAGATATGCGAGCCACATATTGTGCATCGTGATATAAAGTCAAGCAATATACTCCTCGACGAAAAGTTTGAGGCACATGTTGCTGATTTTGGCTTGTCCAGGTTGATTCTTCCTTATCAAACTCATGTCACAACTGAACTTGTAGGCACATTAGGATACATTCCCCCTGAGTATGGACAAGCATGGGTGGCAACTCTACGAGGAGATGTGTATAGCTTTGGAGTTGTCATGCTAGAGCTTCTCACCGGAAGAAGACCGGTCGATGTATGCAAGCCGAAAATGTCAAGAGAGTTGGTTGCTTGGGTTCAACAAATGAGAATTGAAGGGAAAGAAGATCAAGTTTTTGACCCTCTTTTGAGAGGAAAAGGCTATGAAGCAGAGATGCTGCAAGTTCTTGATGTGGCATGTATGTGTGTCAGCCACAATCCTTTCAAGAGACCAAGCATCAGAGAAGTTGTTGAATGGTTGAAGAATGTAGGATTGTCCAAGCGAACAACATAG 3237 0.4242 MTQASCFNLMVSVIVLPLILSLFLIDQVSCCNKNDRDSLLALYGNISISSTHASLNWSNSSDCCKWEGITCDLDLRVTHLELPFRGLFGRISPSLTGLEGLSYLNLSHNQLSGNLPDHLYQLFDHLLVLDLSYNRLSGELPESPFVDSNKTSNRNTNTSVVIQEIDLSSNLFNGTLKHSLIQHIAGGGNLVYFNVSNNSFTGQIPTSLFCINDHNSSALRFLDFSYNDFGDTIQPGLGACSKLEKFRAGFNELTGNLPVDVFDAVSLTEISLPRNKLGGTIDNGIVRLTNLTVLELYSNNLTGKIPPRIGELIKLQSLLLHVNNLTGTLPQSMMNCANLLVLNLRVNLLEGNLSAFNFSRFLKLTTLDLGNNNFSGILPPTLYACKNLTAVRLAFNNLEGQISHEIIGLQSLSFLAVSRNQLQNITGALRILTGLKELKTLMLSKNFFYEKLPSDVDIADTGGFQKLQVLGLGGCSFTGEIPGWLVNLTKLEVLDLSFNEISGSIPPWLGTLPQLFYLDLSVNHLTGIFPIELTRLPALISQQANDKVERAYLELPVFADANNVSQMQYNQLSNLPPVMYLGRNRLSGSIPIEIGNLKVLHQLDLKSNNFSGNIPSEISSLVNLEKLDLSGNHLSGEIPDSLKVLHFLSFFSVANNNLQGRIPTGGQFDTFSSSSFEGNAQLCGTVIQRSCPTQQNSNSTEAHRGTNRKVILGLIIAVCFGTGCIMTVLTLWILSKRRINPGEDHDKIELGSVSPYSNSGVHPEVDKEASLVVLFPNKANETKDLTIFEILKATENFSQANIIGCGGFGLVYKATLPNGITLAIKKLSGDLGLMEREFKAEVEALSTAQHENLVALQGYCVHDGFRLLMYTYMENGSLDYWLHEKADGASQLDWPTRLKIAQGASCGLAYLHQICEPHIVHRDIKSSNILLDEKFEAHVADFGLSRLILPYQTHVTTELVGTLGYIPPEYGQAWVATLRGDVYSFGVVMLELLTGRRPVDVCKPKMSRELVAWVQQMRIEGKEDQVFDPLLRGKGYEAEMLQVLDVACMCVSHNPFKRPSIREVVEWLKNVGLSKRTT* 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0304 1078 Gene3D Ribonuclease Inhibitor 34 159 IPR032675 -
Amo12g0304 1078 ProSitePatterns Protein kinases ATP-binding region signature. 803 826 IPR017441 GO:0005524
Amo12g0304 1078 Gene3D Ribonuclease Inhibitor 262 357 IPR032675 -
Amo12g0304 1078 Gene3D Ribonuclease Inhibitor 162 261 IPR032675 -
Amo12g0304 1078 SMART LRR_typ_2 98 122 IPR003591 -
Amo12g0304 1078 SMART LRR_typ_2 435 459 IPR003591 -
Amo12g0304 1078 SMART LRR_typ_2 488 512 IPR003591 -
Amo12g0304 1078 SMART LRR_typ_2 409 431 IPR003591 -
Amo12g0304 1078 SMART LRR_typ_2 621 645 IPR003591 -
Amo12g0304 1078 SMART LRR_typ_2 288 312 IPR003591 -
Amo12g0304 1078 SMART LRR_typ_2 123 147 IPR003591 -
Amo12g0304 1078 SMART LRR_typ_2 361 385 IPR003591 -
Amo12g0304 1078 SUPERFAMILY L domain-like 62 541 - -
Amo12g0304 1078 Pfam Protein kinase domain 798 1066 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g0304 1078 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Amo12g0304 1078 ProSitePatterns Serine/Threonine protein kinases active-site signature. 919 931 IPR008271 GO:0004672|GO:0006468
Amo12g0304 1078 Gene3D Ribonuclease Inhibitor 358 700 IPR032675 -
Amo12g0304 1078 Gene3D Transferase(Phosphotransferase) domain 1 873 1077 - -
Amo12g0304 1078 PRINTS Leucine-rich repeat signature 126 139 - -
Amo12g0304 1078 PRINTS Leucine-rich repeat signature 621 634 - -
Amo12g0304 1078 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 16 1069 - -
Amo12g0304 1078 SUPERFAMILY Protein kinase-like (PK-like) 783 1068 IPR011009 -
Amo12g0304 1078 SMART serkin_6 797 1068 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g0304 1078 Pfam Leucine Rich Repeat 363 383 IPR001611 GO:0005515
Amo12g0304 1078 Pfam Leucine Rich Repeat 623 645 IPR001611 GO:0005515
Amo12g0304 1078 Gene3D Phosphorylase Kinase; domain 1 762 872 - -
Amo12g0304 1078 ProSiteProfiles Protein kinase domain profile. 797 1073 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g0304 1078 SUPERFAMILY L domain-like 567 683 - -
Amo12g0304 1078 ProSiteProfiles Leucine-rich repeat profile. 490 513 IPR001611 GO:0005515
Amo12g0304 1078 Pfam Leucine rich repeat 466 525 IPR001611 GO:0005515
Amo12g0304 1078 ProSiteProfiles Leucine-rich repeat profile. 623 645 IPR001611 GO:0005515
Amo12g0304 1078 PANTHER OS02G0155400 PROTEIN 16 1069 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0304 Amo-Chr12 5049738 5053522 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0304 21 728 Miscellaneous Gene Families AT1G17240 50.351 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Amo12g0304 Pkinase 9.4e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0304 - - gmx:100781943 1654.03