Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0297 ATGGCTTCTGCTTGTGCTTCCTCTGCCATTGCAGCTGTTGCCATCTCTTCCCCAAGTTCTCAGAAGAATGGATCACAGTTGGGAACCACAAAAGCTTCATTTCTTAGTGGAAGGAAGCTTAAGTTGAACAACTTCACAGCACCAACTACTGGAGCTAGATCCAGCACCACAGTGTGTGTAGCAGCTGATCCTGATAGGCCTCTTTGGTTCCCCGGCAGCACTCCTCCGCCTTGGCTCGATGGCAGTCTCCCCGGAGACTTTGGATTTGATCCTCTAGGACTTGGATCTGACCCAGAGAGCCTAAGATGGAATGTTCAAGCAGAGCTTGTGCACTGCAGATGGGCTATGTTAGGCGCCGCCGGCATCTTCATCCCGGAATTCCTAACCAAGATTGGGATCCTAAACACACCTTCATGGTATACTGCTGGGGAGCAAGAGTACTTCACAGACACCACCACACTCTTCATAGTTGAGCTCATCTTCATCGGCTGGGCCGAGGGACGAAGATGGGCTGATATCATCAAGCCAGGCTGTGTTAACACTGACCCTATCTTCCCTAACAACAAGCTCACCGGAACTGATGTAGGGTATCCCGGCGGCCTATGGTTTGACCCTCTCGGATGGGGAAGCGGTTCACCTGAGAAGATCAAGGAGTTGAGAACAAAGGAGATCAAGAATGGAAGGTTGGCCATGTTGGCTGTCATGGGAGCATGGTTCCAGCACATTTACACCGGCACCGGCCCTATCGACAACCTCTTTGCACACCTTGCTGATCCTGGCCATGCTACTGTTTTCGCTGCTTTCACCCCCAAGTGA 816 0.5172 MASACASSAIAAVAISSPSSQKNGSQLGTTKASFLSGRKLKLNNFTAPTTGARSSTTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0297 271 Pfam Chlorophyll A-B binding protein 75 241 IPR022796 -
Amo12g0297 271 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 271 - -
Amo12g0297 271 Gene3D Chlorophyll a/b binding protein domain 76 261 - -
Amo12g0297 271 SUPERFAMILY Chlorophyll a-b binding protein 61 269 - -
Amo12g0297 271 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 271 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0297 Amo-Chr12 4967398 4969706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0297 46 271 Chloroplast and Mitochondria Gene Families AT3G61470 88.496 6.89e-152 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0297 K08908 - gmx:100784089 528.094