Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0291 ATGAAAAACAAGCGATGTAACAGAAAAACCAACATGGGATATTGGAAGATCACAGGAAAAGAGAGAATCATCAAAAGAACAGGGACAGACAGTGTCATAGGTACAAAAAGAACACTAGTTTTCTACAAGCGTCCACATAATGTCAAAACCAATTGGGTTCTTCATGAATATCATGCACTTCATCAAAAGAGCAACATCGTGTTGAGCCGTGTAACAATGAATGCTGAGAAAAGGGAAAAGAAGCTCAAGACAAAAGCAAGCAACATAATCGAAGAGGAAGTAAAATGTGAAGATGAACCATGCAGCGAAATTACTGGCTGTGTTACCCAAGCAACTACAGAAGATGCAATCCTTCCTGATAATGCATGTGTTTCATCCGAGTGGCAACAACCTCAAGCTATGGACTATGAAATTCTCTCATCGGGACAACGATCTTCAGTGGCCTATTCCGGTAATGAAAACAATGCCGCGTTGCTTCCAATGGAAGCAACGTGGAGGCAAGATGCCGGTATGAATACCGAGTGTTTTTGGAATTCGCTGTTTTCTAGCATCGATGCTGACCCTCATGCCGAGTTCTTAAATTCAGTGTTGGCAGGGGATGATCAACTCTATGTTGATTCCGGCCACCATTGA 633 0.4218 MKNKRCNRKTNMGYWKITGKERIIKRTGTDSVIGTKRTLVFYKRPHNVKTNWVLHEYHALHQKSNIVLSRVTMNAEKREKKLKTKASNIIEEEVKCEDEPCSEITGCVTQATTEDAILPDNACVSSEWQQPQAMDYEILSSGQRSSVAYSGNENNAALLPMEATWRQDAGMNTECFWNSLFSSIDADPHAEFLNSVLAGDDQLYVDSGHH* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0291 210 Gene3D NAC domain 1 80 IPR036093 GO:0003677|GO:0006355
Amo12g0291 210 Pfam No apical meristem (NAM) protein 3 58 IPR003441 GO:0003677|GO:0006355
Amo12g0291 210 PANTHER FACTOR, PUTATIVE-RELATED 4 96 - -
Amo12g0291 210 ProSiteProfiles NAC domain profile. 1 74 IPR003441 GO:0003677|GO:0006355
Amo12g0291 210 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 96 - -
Amo12g0291 210 SUPERFAMILY NAC domain 3 72 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0291 Amo-Chr12 4865549 4870958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0291 5 70 NAC Transcription Factor Family AT2G24430 50.000 1.71e-13 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo12g0291 NAM 2.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0291 - - aip:107626709 430.254