Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0284 ATGAGTACAAAATCTGATTCAGGCAATATATTGAATAATTCTGATGCAATTGTGATCTCTGGGAAGATCATGGTCGCAGTAGTGGTATTGCTCTCATTTGTGTTTGTTTTTGTCTTTATGCTTCATCTCTATTCCAAGTTTTCAATGTGGCGTGTTCAGCAAGAAACCTCCATTCCTTCACCACAAATCCGCCGTCGTCGCCGCCACCGCCGCCATCGCCACCTTGTATTCGCCTCGGCCGAAGACGCTATCCTCCATGGAACTCAAAATGTTGGGCTTGACCCTTCAGTTCTTAAGTCCATACCTGTGTTGGTGTTCCAACCCCATGAATTCAAAGAGGATTTAGAATGTGCTGTTTGCATATCTGAGCTTGTTGAAGGTGAAAAGTTCAGAGCTTTGCCACATTGCAATCATGGGTTCCATGTTGATTGCATTGACATGTGGTTCCAATCACATTCTACTTGTCCCCTTTGTAGGACACTAGTTACTGAAAAACTCTCTAAGCTAAATAATAGCACTCCAAGTGTTCGAGAGAATGTCACAGAGAACAGTGAATCATCATCAGAAGCTGAAAACTCTGCTGATGTGAATACCAATGATGAGTCTTCAAATTTTCCCACACATGTGTTGGTTTGGGGTGATCAAACACAATTTTCACACACTACTGAGGATCCACATTGCTCATCGTCATCTGGTTCATGTTCTTCAAGCAGTGAGAGTGGAAGTGATAGTAGCACTAGTAGCAGCAGCAATGGAAGAAACAATAATGGAGTGTTGGTGATTGATATACCAAATGATGAGGTCACTCCTGAAGATGATGATGAGATGAAATCATCATCACCAATGGTAGCAAGATTGAGGTCAATCAAGAGGCTTCTAAGTAGGGACAAAAAGTCAACTAGTCCTTGTATTCCCAATTCTTTTGATGTGGAACAAGCATAG 942 0.4204 MSTKSDSGNILNNSDAIVISGKIMVAVVVLLSFVFVFVFMLHLYSKFSMWRVQQETSIPSPQIRRRRRHRRHRHLVFASAEDAILHGTQNVGLDPSVLKSIPVLVFQPHEFKEDLECAVCISELVEGEKFRALPHCNHGFHVDCIDMWFQSHSTCPLCRTLVTEKLSKLNNSTPSVRENVTENSESSSEAENSADVNTNDESSNFPTHVLVWGDQTQFSHTTEDPHCSSSSGSCSSSSESGSDSSTSSSSNGRNNNGVLVIDIPNDEVTPEDDDEMKSSSPMVARLRSIKRLLSRDKKSTSPCIPNSFDVEQA* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0284 313 MobiDBLite consensus disorder prediction 171 206 - -
Amo12g0284 313 MobiDBLite consensus disorder prediction 220 282 - -
Amo12g0284 313 Pfam Ring finger domain 116 159 IPR001841 -
Amo12g0284 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 165 IPR013083 -
Amo12g0284 313 SUPERFAMILY RING/U-box 97 169 - -
Amo12g0284 313 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Amo12g0284 313 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 6 308 IPR044675 -
Amo12g0284 313 CDD RING-H2_EL5_like 116 159 - -
Amo12g0284 313 PANTHER RING-H2 FINGER PROTEIN ATL3 6 308 - -
Amo12g0284 313 MobiDBLite consensus disorder prediction 220 258 - -
Amo12g0284 313 SMART ring_2 117 158 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0284 Amo-Chr12 4626157 4627098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0284 6 297 C3H Transcription Factor Family AT1G53820 38.511 2.96e-55 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0284 - - gmx:100775523 257.684