Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0277 ATGGAGTTGATGCAAGAATCCAACAAAGGCTACTCTCAAGATTTGGAAGAAGAAGAGGAGGAGGAAGAAGCACCGGGAGAAGAAACCACCACCGCCGCCGGGTTACACCATCATCAACATCAAGATGCAACAACATCAAATTACTTCAACCACACAACAAGAATGAATCAAAATCAACCGCAACCGCAACCGCAACAGTTAGTAGACTTCATGGACTTGTCACTTGGGACAAACATCAACCACCATGAAGGCATCAACAATTTCCAAGGATACTCCTCCTCCTCCGCCGCCGCCGCCGCCACCACCACCACCACAAATAATACCAATCTACAACCTCCGCCGCCTGCTCCGGCGGAGAAAGAGCACATGTTCGACAAAGTAGTGACGCCGAGCGACGTCGGGAAGCTGAACAGGCTGGTAATTCCCAAACAGCATGCGGAGAAGTACTTCCCGCTCGACTCGACGTCGAACGAGAAGGGACTTCTCCTGAATTTCGAAGACCGGAACGGGAAATTGTGGCGGTTCAGATACTCTTACTGGAACAGTAGCCAGAGCTATGTGATGACGAAAGGATGGAGCAGATTTGTGAAGGAGAAGAAACTTGATGCAGGTGACATTGTTTCTTTCCAACGCGGAGTTGGAGAAAGTTATAGACATAGATTATACATAGATTGGAGAAGAAGACCTGATAATCATCACCATCACCATCACAACCTCCATGGAGGACTTGATTTTCCCTCTTCGTCTTCGAATTTCATCACTCCCTTCTTCATTCCCAGTCAAGCGTCTTCGCATTACTCTACGATTCGATACGGTGGCAGATTTTACTCTCTGCCACCGCAATCGCAACCACAGCCACAGCCACAACCACAAATGATGATGTCACCAAGACATCATCATTATTATCCAATTCATCATGGTGGATATGGCGGCTATAATCATCCTCACAGTAATGAGTTGTTTTATCTGAGATCAACAACATCAACAACACTACCTTCTCCTCCTCCTCCTTCTTCTTCTTCAATGTCAATGGTTGATCATCATCATCATTACCATCAAGGATTATTGGCAAGACAACAACAACAAGAACAAGAACAAGAAAGGGGTTCACCAATGATCATAGATTCAGTACCAATTGCTCATCATTTTCATCATCATGGTGGTGGTGGTAATGGTAATAATGGTAGTAATAGTAATAGTAACAATAATAGTAACAATAATAATTCTGCAGGAAAAAGGTTAAGGCTATTTGGTGTGAACATGGAATGTGCTTCTTCTTCTTCAACAGCAACAACACCACAACAAGAAGATCATCATCAAGAACAAGAACAAGAAGATCCAAAATGCTTCACCTTGTTCTCTTCTACTAACTCAAGGGATGCAGAAGAATCTGGTGGTGGAGAAGATCAGAGAAGAAGAATAAGGGAGCAAGCTGCAAATTTTTTTGATTTGGACCCTTCTTTGCAATTCCGCCAACACTGA 1482 0.4399 MELMQESNKGYSQDLEEEEEEEEAPGEETTTAAGLHHHQHQDATTSNYFNHTTRMNQNQPQPQPQQLVDFMDLSLGTNINHHEGINNFQGYSSSSAAAAATTTTTNNTNLQPPPPAPAEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSTSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGESYRHRLYIDWRRRPDNHHHHHHNLHGGLDFPSSSSNFITPFFIPSQASSHYSTIRYGGRFYSLPPQSQPQPQPQPQMMMSPRHHHYYPIHHGGYGGYNHPHSNELFYLRSTTSTTLPSPPPPSSSSMSMVDHHHHYHQGLLARQQQQEQEQERGSPMIIDSVPIAHHFHHHGGGGNGNNGSNSNSNNNSNNNNSAGKRLRLFGVNMECASSSSTATTPQQEDHHQEQEQEDPKCFTLFSSTNSRDAEESGGGEDQRRRIREQAANFFDLDPSLQFRQH* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0277 493 MobiDBLite consensus disorder prediction 390 411 - -
Amo12g0277 493 Coils Coil 1 21 - -
Amo12g0277 493 MobiDBLite consensus disorder prediction 13 27 - -
Amo12g0277 493 MobiDBLite consensus disorder prediction 381 411 - -
Amo12g0277 493 MobiDBLite consensus disorder prediction 447 461 - -
Amo12g0277 493 MobiDBLite consensus disorder prediction 1 42 - -
Amo12g0277 493 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 88 455 - -
Amo12g0277 493 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 88 455 IPR044800 GO:0003700
Amo12g0277 493 SUPERFAMILY DNA-binding pseudobarrel domain 120 227 IPR015300 -
Amo12g0277 493 ProSiteProfiles B3 DNA-binding domain profile. 124 227 IPR003340 GO:0003677
Amo12g0277 493 MobiDBLite consensus disorder prediction 326 346 - -
Amo12g0277 493 Gene3D - 118 239 IPR015300 -
Amo12g0277 493 MobiDBLite consensus disorder prediction 462 479 - -
Amo12g0277 493 SMART B3_2 124 229 IPR003340 GO:0003677
Amo12g0277 493 CDD B3_DNA 122 223 IPR003340 GO:0003677
Amo12g0277 493 Pfam B3 DNA binding domain 124 228 IPR003340 GO:0003677
Amo12g0277 493 MobiDBLite consensus disorder prediction 423 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0277 Amo-Chr12 4514607 4517238 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0277 118 429 RAV Transcription Factor Family AT2G46870 45.741 2.73e-73 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo12g0277 B3 2.3e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0277 - - gsj:114390989 343.199