Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0273 ATGGCTAGAAGTGCCACAATTCCATTTCCAATACTTGATTTCATTCCTGTTGGATTCAGGTTCAAGCCAACAGATGAAGAGCTTGTGAGCTATTACCTCAATCACAAGCTCCTAAATGACAATTTTCCAATCGATATTATCCCTGACATTGATCTTTGCAAGGTTGAACCTTGGCAAATTCCAGCATTATCAAAGGTAAAATCGGATGATCCAGAATGGTTTTTCTTTAGTGGACGTGATTACAAGTATGGAAAGAGCAAAAGATCAAACAGGGCAACCAAAGGAGGATATTGGAAAGCCACAGGACAAGATAGATTCATAAAGGAAAGAGGAACTATGAATGTAATTGGGAGCAAGAAGACACTTGTTTTCTATAGTGGCCGTGTTCCTAATGGTGTCAAAACCAATTGGGTTATCCATGAGTATCATGCTACTACCTTTGATGATAGCCAGAGGAATTTTGTTTTGTGTCGCTTGATGAAGAAAGTCGAGAGAAAATCCGAAGATGGAACTGATGCACAAGCCTGTGATGAGGGGGAACCTAGCACTCACATGGAAGAAGCAGATGAGAGTGTCTCAACTATGTTTGATTCGCCAGATGTGGACATGGATTCAATCTTCCACACACTGCCTCAAGACAGATCATCATCACAGCATTCTCCAGTCGGCATTGAACAGCAAGAATCCTTCCCATTCTCCCCATCTGAAAATTATTACCTTGTAAATGAAGATAGCAGTATGCATATACAATTCGAAACAAACGAAGAGAAGCAAGATGCTGAGAAATTTGCGGATTCGATTTTGGATAGTGGCAATATAGCTATGTTTGAAGAAAGACAGCAGCATCATACTTTCATGAATAATCACCTCCGCTCGGTCCCATCGATGAGGGTATGCTATGAAAGCAGTGACACAGATGCTGAAGTAGTCTCTAGACGGGCTGATTCAAGAGAATACCATGTATCAAAAATGGTTCAATCATCACATAGTGCTGCGCGCACAGATAAAACTAGAAGTATCTCTTCAGAAGACTTTTGGGGAGTGGATTCATCTTCATGTGACTCAAATGCAGATAAACCTTTTGAGATCAATTCTATTGAAATTTCTAGTCCTCCACCGGCTCTAAGTGGATCGAAAAATCAATATAATCCGAGACTATCTCAAACACATAGGAAGGTTTCAAGCAATGCAATTCCCAATCTTGAGGTGAGAACACCGAGCAGCCAGACTAAACGACGAAGAAGCCTATCTTGA 1254 0.4083 MARSATIPFPILDFIPVGFRFKPTDEELVSYYLNHKLLNDNFPIDIIPDIDLCKVEPWQIPALSKVKSDDPEWFFFSGRDYKYGKSKRSNRATKGGYWKATGQDRFIKERGTMNVIGSKKTLVFYSGRVPNGVKTNWVIHEYHATTFDDSQRNFVLCRLMKKVERKSEDGTDAQACDEGEPSTHMEEADESVSTMFDSPDVDMDSIFHTLPQDRSSSQHSPVGIEQQESFPFSPSENYYLVNEDSSMHIQFETNEEKQDAEKFADSILDSGNIAMFEERQQHHTFMNNHLRSVPSMRVCYESSDTDAEVVSRRADSREYHVSKMVQSSHSAARTDKTRSISSEDFWGVDSSSCDSNADKPFEINSIEISSPPPALSGSKNQYNPRLSQTHRKVSSNAIPNLEVRTPSSQTKRRRSLS* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0273 417 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Amo12g0273 417 MobiDBLite consensus disorder prediction 364 417 - -
Amo12g0273 417 Gene3D NAC domain 24 167 IPR036093 GO:0003677|GO:0006355
Amo12g0273 417 SUPERFAMILY NAC domain 14 162 IPR036093 GO:0003677|GO:0006355
Amo12g0273 417 MobiDBLite consensus disorder prediction 167 191 - -
Amo12g0273 417 MobiDBLite consensus disorder prediction 167 196 - -
Amo12g0273 417 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 13 376 - -
Amo12g0273 417 ProSiteProfiles NAC domain profile. 15 162 IPR003441 GO:0003677|GO:0006355
Amo12g0273 417 MobiDBLite consensus disorder prediction 321 340 - -
Amo12g0273 417 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 13 376 - -
Amo12g0273 417 MobiDBLite consensus disorder prediction 211 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0273 Amo-Chr12 4413757 4417883 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0273 12 162 NAC Transcription Factor Family AT4G35580 56.410 2.99e-55 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo12g0273 NAM 8.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0273 - - adu:107473112 773.081