Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0259 ATGATGGACGCGTACTCCTCTGGAGAGGAAGTGGTTATTAAGACTAGGAAACCTTATACAATCACCAAGCAAAGAGAACGATGGACAGAGGAGGAGCATAACCGATTTCTAGAAGCTTTGAAGCTCCATGGGCGGGCATGGCAGCGAATAGAAGAGCATATTGGAACAAAAACTGCCGTGCAGATCAGGAGCCATGCGCAGAAGTTCTTTACAAAGTTGGAGAAAGAGGCCCAGGCAAAGGGTGTTCCAATTGGACAAGCTCTTGACATAGAAATCCCCCCTCCACGACCCAAAAGAAAACCGAGCAATCCTTATCCTCGGAAGACCAGTGCTGGTGTCGCATCATTGCATAGTGGAGCAAAGGATGGAAAACTCAGTTCTCTTGAATCTTCACATGCTAAACAAGCACTGGACTTGGAAAAGGAACCTGTCCCAGAGAAACATAATGGAGACAAAGTGTCACATGTAAAAGAAAATAAGGATGAGAACTGCTCTAAAGTATTTACTCTTCTCCAGGAGTTACCATGTTCTTCGGTTTCTTCAGCAAACAAGAGTTCAATATCGTGGTCAGTGCCACTGCAAAATTCATGCGGCTTAAGGGAGATTATACCTTCAGTGAAAGAGGTAATAGCGAAAGATGGAACAAATAAATCTTTTGTTACTATTGAACTTGAAAATCGGAAGTTGGAGATAGATGATGGGAAGCAGACTAATGGAAACTCCAGTTTGGAGAATTCTGATACAGTGAAATTGGTTCAAAATGAAAAAACAGATGGTCTTAACTGTGAACTAACCATAGATGGGATACAAGGCAATCAGAATTATCCGAGACATGTTACTGTGCACGTTGTTGATGGGAAACTCAGAACAAGTACTGCAAATCCATCCCAAGATATGGTGTTTCAAGATTCTATGTTTCAGCCACTAGGAGGGATTAATGGGCAACCTAATCTTTTCACCAATTCAACCGTATCAAACACGAGCGAGAGCCAAAACAACACAGAGAGATCTTCTGTTCATCAATCATTTCTTCCTTACCCTCCCTTCATACAAAATAATCAAGGCGATTACCAATCATTTCTTCAAATGTCTTCCACATTTTCAAGTCTTGTTGTGTCTACCTTGCTGCAAAACCCAGCAGCACATGCTGCCGCAAGTTTTGCAGCTACTTTCTGGCCCTGTGCAAATTCAGAAGCTTCAGCAGATTCTCCTACGTGCTCTCAAGGAGGTTTTCCACCCAGACAGAATGGCTCTCCTCCAAGTGTGGCGGCTATTGCAGCCGCCACTGTAGCTGCTGCAACTGCATGGTGGGCTGCCCATGGACTGCTTCCTATGTGTGCTCCACTCCATACTGCTTTTGCTTGTCCTCCAACATCAATGCCTGCAGTTCCATCAATGAATACTGGTGAAGCACCAGCACCAGCACCGGTACAAGAACCGGCACCAATACCAACATCAGAGACAGAACAAGAGAAGAATAGTCTGCAAAATCCTCCTCAGCAGGACCAGACACTTGATCCTGTATGCTCGGAAGCTCAACAAGCACAACAGTCACCTTCTAAGTCCCCAGTTGATATCTCATCAGATTCTGAGGAGAGTGGAGATGCCAAGTTACATGCTTCGCCGTCCAAGGCTACTGATCAAGAGTTGAACAAAGAAATATCCGAGCACATTGATTCCAACAAAGCAAAAGGTAGAAAACCAGTTGACCGATCCTCATGTGGTTCCAACACAACCTCTAGCAGCGAATTGGAGACTGATGCATTAGAGAAGGATGAGCAAGGGAAGGAAGAGCCTGAAACAGCTGATGCTAACAATTTAGCCATTGACTCTAGTAATCGTCGTAGTAGAAGTGTTAGCAACCTTACTGATTCTTGGAAAGAGGTCTCCGAGGAGGGGCGACTGGCCTTTCGGGCTCTCTTTGCCAGAGAGGTGTTGCCACAAAGCTTTTCGCCTCCGCCCGATTTGCTAAACAAGGATCAGGAAATGGACAGCATCAAGGATAACAAGCAAACCACAGATATCAAGGATGAAGGCCAAGACAGCAAGAAATGCAGTTCTATTTTCGAGGGTATTCAGAAAATGATGCCATGTATAGAGAATAATGAGGAAGAGGGACTGCTAACCATAGGACTTGGACAAGGAAAGCTCAAGACTCGTCGGACCGGCTTCAAACCTTACAAAAGATGTTCAATGGAGGCCAAGGAGAACAGGGTTGGGAGCACGGGGAACCAAGGTGAAGAGCAAGGGTCAAAGAGAATACGCTTAGAAGGGGAGGCTTCAACTTGA 2289 0.4513 MMDAYSSGEEVVIKTRKPYTITKQRERWTEEEHNRFLEALKLHGRAWQRIEEHIGTKTAVQIRSHAQKFFTKLEKEAQAKGVPIGQALDIEIPPPRPKRKPSNPYPRKTSAGVASLHSGAKDGKLSSLESSHAKQALDLEKEPVPEKHNGDKVSHVKENKDENCSKVFTLLQELPCSSVSSANKSSISWSVPLQNSCGLREIIPSVKEVIAKDGTNKSFVTIELENRKLEIDDGKQTNGNSSLENSDTVKLVQNEKTDGLNCELTIDGIQGNQNYPRHVTVHVVDGKLRTSTANPSQDMVFQDSMFQPLGGINGQPNLFTNSTVSNTSESQNNTERSSVHQSFLPYPPFIQNNQGDYQSFLQMSSTFSSLVVSTLLQNPAAHAAASFAATFWPCANSEASADSPTCSQGGFPPRQNGSPPSVAAIAAATVAAATAWWAAHGLLPMCAPLHTAFACPPTSMPAVPSMNTGEAPAPAPVQEPAPIPTSETEQEKNSLQNPPQQDQTLDPVCSEAQQAQQSPSKSPVDISSDSEESGDAKLHASPSKATDQELNKEISEHIDSNKAKGRKPVDRSSCGSNTTSSSELETDALEKDEQGKEEPETADANNLAIDSSNRRSRSVSNLTDSWKEVSEEGRLAFRALFAREVLPQSFSPPPDLLNKDQEMDSIKDNKQTTDIKDEGQDSKKCSSIFEGIQKMMPCIENNEEEGLLTIGLGQGKLKTRRTGFKPYKRCSMEAKENRVGSTGNQGEEQGSKRIRLEGEAST* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0259 762 MobiDBLite consensus disorder prediction 585 600 - -
Amo12g0259 762 MobiDBLite consensus disorder prediction 733 762 - -
Amo12g0259 762 Gene3D - 27 74 - -
Amo12g0259 762 Pfam Myb-like DNA-binding domain 25 68 IPR001005 -
Amo12g0259 762 MobiDBLite consensus disorder prediction 647 682 - -
Amo12g0259 762 PANTHER SWI/SNF COMPLEX-RELATED 3 744 - -
Amo12g0259 762 MobiDBLite consensus disorder prediction 483 527 - -
Amo12g0259 762 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 23 72 IPR006447 GO:0003677
Amo12g0259 762 MobiDBLite consensus disorder prediction 605 626 - -
Amo12g0259 762 MobiDBLite consensus disorder prediction 84 158 - -
Amo12g0259 762 CDD SANT 27 70 IPR001005 -
Amo12g0259 762 MobiDBLite consensus disorder prediction 465 627 - -
Amo12g0259 762 ProSiteProfiles SANT domain profile. 23 74 IPR017884 -
Amo12g0259 762 MobiDBLite consensus disorder prediction 660 682 - -
Amo12g0259 762 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 74 IPR017930 -
Amo12g0259 762 ProSiteProfiles Myb-like domain profile. 20 70 IPR001005 -
Amo12g0259 762 PANTHER PROTEIN LHY 3 744 - -
Amo12g0259 762 SUPERFAMILY Homeodomain-like 19 75 IPR009057 -
Amo12g0259 762 MobiDBLite consensus disorder prediction 134 158 - -
Amo12g0259 762 MobiDBLite consensus disorder prediction 549 569 - -
Amo12g0259 762 SMART sant 24 72 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0259 Amo-Chr12 4135516 4142203 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo12g0259 Myb_DNA-binding 2.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0259 K12133 - gmx:100101859 1084.32