Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0258 ATGATGCATATTATTATTGGTTTAGAACTTCTTGTGTTCTTACCTTTTTCTTGTTCTCTCCAACCACCTAATTTGCTTCCAAATCCTTGCAATGAAACTTGTGGAAAACTCCATGTTCCTTTCCCATTCTTTGTCAACTCTTCTTGTGCCTCAATCTCAACTTCTTTCAACCTTTCTTGTTCAAACTCCTCTAACCTTTTCCTCAAAATTGATTCACAAAGTTACAAGGTTTTAGAGTTCTTCAATGATGGCTTGTTGGTGGACTTTCCAGGCGCATCGTCGTCTTCGACTTGCCGAATGTACAATGACTTGAACTCATTTGGGAAAAGTTTTGAAGGAAAAGATGAAGATCAGTATGGAATCTCATTGGACAATGTTGTTGGACTCTATGATTGTGATGACTCCTCAGTATGCAAACCAGATTGTGAAACAATTGAGCTTCCAGGGTGTGATGGAAGTGGCAACAACCTTGGATGCTGTTATCCACTGAGTGATCATAGCATATGGCACAGTGGTGAAGGGTTCTCAGTGTTCTCTGAATTTGGATGCAGAGGGTTCTCAAGTTGGGCTGTTGTTAGAGGATCTAATTCAGGAAAACATGGGGTGAAGTTGGAATGGGGTGTTCCTTTGAAGAAGAATTCATCATCAATGGAGAAAGTTTGTGATTTCAATGCAGAAATGGTGAATGCTAGTTCAGTTCAAGGTGCAGTTAGGTGTGTTTGTCAAGATGGATTTCTTGGTGATGCTTGTATGAAGAATGGACAGGAAGCATATGGAGACAACTGTTACATCAAAAAACATGATCAAAGGAAAATGCTCATCATTGTAGGAATCCTGGGTCCATTTCTCATTGTTGCTTCATTGATTACACTATTCTATCTTCTCAAAAAACCAGCAACAAAGCCAGGAATGTTTGACACAGAGCAGGCCTATTACCACAGCATTTCGTTCCGAAAACCGAATCGAACTCGCCTGTTCAGCCACCATGATCTAGACAAAGCCACCAAAGGTTTTGAAGAAGGACAGAAGCTTATGAGTGGAGCAGCCGGGTCGATTTTCGCCGGAGTTCTGGGCGACGGATCCCACATAGCAGTTCAGAAGCTAAAATGTGAGAATGAGAAGGACATAATCCAAGTTGTATCACAAATTGAGATTCTATCAAACATTGTGCATAGGAACATGGCTTGTGTTCTTGGATGTTGCATTGAATCTAGTTACACTCCTCTAGTGGTTTATGAGTACCCTGCTAATGGAACATTAGAGGAGCATTTGAATCATGAATTCAAAGGAAATAATGGAATTGGTTTGGATTGGTATAGAAGATTGATCATAGCTACTGAAACAGCTTACATTCTTGCATTCTTGCACTATGAGAATTCCCCTCCAATTTTCCACAACAATCTAAAATCTAGCTGCATTTTCTTGGATGATGATCTCTCAGTCAAGATTGCAGGGTTCGGCCTACTCAATTCTAAATTCAAGTATGAATCTCATCACTTTTGCAAGAATGATGTCTATGACATGGGATTGCTTCTACTTGAGATCATCTCAGGCTCAAACTCGACTCACCAGAAGTCTCCGCCTACGTCGGCTTTGGAGAAAATAAGGGATGGGAAGCTAGAAGAGATTGTTGATCCTCTCCTTTCGTATCACGAGATGGCGCAGCTCCGGCGAGATCAGGTGCAGATTGTGGCAGACCTTGCAACAAGGTGTATGCTATTTGGTGGAGATGGAAAGATTGGAATGGTTGATGTTGTAAGAGAATTGGTGCACATAACAAAACAGAGTGGTGATGCTGGCAATTTGAATTTCTTGGAGGAAACATTCTCAAATTCAAGCCTTCTTCAAATGATTTCAATGTCTCCTGATTCTATCATTGTTCATTGA 1887 0.4081 MMHIIIGLELLVFLPFSCSLQPPNLLPNPCNETCGKLHVPFPFFVNSSCASISTSFNLSCSNSSNLFLKIDSQSYKVLEFFNDGLLVDFPGASSSSTCRMYNDLNSFGKSFEGKDEDQYGISLDNVVGLYDCDDSSVCKPDCETIELPGCDGSGNNLGCCYPLSDHSIWHSGEGFSVFSEFGCRGFSSWAVVRGSNSGKHGVKLEWGVPLKKNSSSMEKVCDFNAEMVNASSVQGAVRCVCQDGFLGDACMKNGQEAYGDNCYIKKHDQRKMLIIVGILGPFLIVASLITLFYLLKKPATKPGMFDTEQAYYHSISFRKPNRTRLFSHHDLDKATKGFEEGQKLMSGAAGSIFAGVLGDGSHIAVQKLKCENEKDIIQVVSQIEILSNIVHRNMACVLGCCIESSYTPLVVYEYPANGTLEEHLNHEFKGNNGIGLDWYRRLIIATETAYILAFLHYENSPPIFHNNLKSSCIFLDDDLSVKIAGFGLLNSKFKYESHHFCKNDVYDMGLLLLEIISGSNSTHQKSPPTSALEKIRDGKLEEIVDPLLSYHEMAQLRRDQVQIVADLATRCMLFGGDGKIGMVDVVRELVHITKQSGDAGNLNFLEETFSNSSLLQMISMSPDSIIVH* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0258 628 Pfam Wall-associated receptor kinase galacturonan-binding 30 80 IPR025287 GO:0030247
Amo12g0258 628 Gene3D Transferase(Phosphotransferase) domain 1 416 495 - -
Amo12g0258 628 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 39 623 IPR045274 GO:0007166
Amo12g0258 628 SUPERFAMILY Protein kinase-like (PK-like) 317 589 IPR011009 -
Amo12g0258 628 ProSiteProfiles Protein kinase domain profile. 338 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g0258 628 Pfam Protein tyrosine and serine/threonine kinase 340 493 IPR001245 GO:0004672|GO:0006468
Amo12g0258 628 Gene3D Phosphorylase Kinase; domain 1 310 414 - -
Amo12g0258 628 Gene3D Transferase(Phosphotransferase) domain 1 496 594 - -
Amo12g0258 628 PANTHER OS10G0351500 PROTEIN 39 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0258 Amo-Chr12 4126459 4129574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0258 29 592 Receptor kinase-like Gene Family AT2G23450 29.642 4.12e-59 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-3 Amo12g0258 PK_Tyr_Ser-Thr 5.1e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0258 - - gmx:100779880 812.757