Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0251 ATGTCGGAAGGTGCTGAAATCGATGAGCGTGTGGACTTTGATGATGAGAATTACATGGAAGAGATGGATGAYGATGATGTCGAGGAACAATCAGATGGCGATGATGAGGATGATGATGATGATGGGGATGGCGATGATAATAATAACGATAATGCGAACGATAATGATGACGACGATGACGACGACGACGATGATGGAGTGGATGGACAAGGTGAGGAAAATGCTGAAGAACAGGAATATGAAGACTCGGGGGAGGAGGCTGGTGGGAAAGACCAAATGGCCAAAGGGGATAGAASTGGCATTACCACTGGGTCCGAAGGAGATGGGCTGAAACCACCYTTCATCGAYGAAGAAGAGAAACAGAAGCATGATGAACTTCTTGCAMTGCCTCCTCATGGTTCTGAAGTTTTTATTGGTGGACTTCCTCGGGATGTTTGCGAGGATGATTTGAGGGAATTGTGCGAATCGTTGGGTGAAATTTTTGAGGTGCGATTGATGAAAGACAGGGACAGTGGAGAAGGTAAGGGGTATGCTTTTGTGGCTTTCAAAACAAAAGAGGTTGCACAAAATGCCATAGAAGAGATACACAATAAGAAATATAAGGGTAAAACTTTGAGGTGTTCACTATCTGAGACAAAACAAAGATTGTTCATTGGTAATGTTCCGAAAACTTGGACTGAGGAGGARTTTAGGAGAGTAGTCGAGGGTGTTGGTCCTGGAGTTGAAGTCATTGAGCTCTTTAAGGACGTTCAAAATCCTAGCAGGAACCGTGGGTTTGCGTTCGTGTCGTATTACAATAATGCATGCGCGGATTATTCAAGGCAGAAAATGTCAACTGCAGGTTTTAAGCTGGAAGGTAATACCCCAACTGTCACATGGGCAGATCCAAAGAATTCAACTGATCATTCAGCTGCTTCCCAGGTTAAAGCTCTTTATGTGAAGAACATACCTGAGAATACTACTACCGAACAACTTAAGGAACTGTTCTCTCGTCATGGAGAAGTAACAAAAGTGGTCATGCCACCTAGCAAAGCCGGAGGGAAGCGTGATTTTGGTTTCATCCATTATGCAGAGAGGTCAAGTGCATTAAAGGCCGTAAAAGACTCAGAGAAATACGAAGTTGATGGCCAATTGCTYGAGGTTGTTCTTGCSAAACCTCAAGCTGAGAAAAAACCCGATATGGGTTACGGCTATAATCCTGGACTTGCACATCCTGGGTTTGGTGGTGCCTTTGCTGGAAATCCGTATGGCTCGGCAATAGGTGCTGCAGGAGCTGGATATGGTGTTGCTCCTAGCTTTCAACAGCCGCAGCAACCAGTGATATATGGTAGGGGTCCAATGCCGGCTGGAATGCAGATGGTTCCGATGGTATTGCCAGATGGTAGAATCGGCTATGTCTTTCAACAGCCTGGTGTACAGATGCCAGCACCTCGTCCACGCGGGCCTGGGAGGGGCAACAGTTCAGGGGGTCCTGCAGGAAGAGGGGGAGGCAGTGGCAATGAGGGCAGCGGTAAACGCGGTCGGAGGTATCAACCGTACTAG 1542 0.4656 MSEGAEIDERVDFDDENYMEEMDDDDVEEQSDGDDEDDDDDGDGDDNNNDNANDNDDDDDDDDDDGVDGQGEENAEEQEYEDSGEEAGGKDQMAKGDRXGITTGSEGDGLKPPFIDEEEKQKHDELLAXPPHGSEVFIGGLPRDVCEDDLRELCESLGEIFEVRLMKDRDSGEGKGYAFVAFKTKEVAQNAIEEIHNKKYKGKTLRCSLSETKQRLFIGNVPKTWTEEEFRRVVEGVGPGVEVIELFKDVQNPSRNRGFAFVSYYNNACADYSRQKMSTAGFKLEGNTPTVTWADPKNSTDHSAASQVKALYVKNIPENTTTEQLKELFSRHGEVTKVVMPPSKAGGKRDFGFIHYAERSSALKAVKDSEKYEVDGQLLEVVLAKPQAEKKPDMGYGYNPGLAHPGFGGAFAGNPYGSAIGAAGAGYGVAPSFQQPQQPVIYGRGPMPAGMQMVPMVLPDGRIGYVFQQPGVQMPAPRPRGPGRGNSSGGPAGRGGGSGNEGSGKRGRRYQPY* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0251 513 MobiDBLite consensus disorder prediction 111 129 - -
Amo12g0251 513 Gene3D - 296 420 IPR012677 -
Amo12g0251 513 Gene3D - 115 214 IPR012677 -
Amo12g0251 513 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 46 511 - -
Amo12g0251 513 MobiDBLite consensus disorder prediction 1 133 - -
Amo12g0251 513 CDD RRM3_hnRNPR_like 308 386 - -
Amo12g0251 513 SMART rrm1_1 135 208 IPR000504 GO:0003723
Amo12g0251 513 SMART rrm1_1 310 382 IPR000504 GO:0003723
Amo12g0251 513 SMART rrm1_1 215 292 IPR000504 GO:0003723
Amo12g0251 513 MobiDBLite consensus disorder prediction 468 513 - -
Amo12g0251 513 SMART rrm2_1 135 208 IPR003954 GO:0003676
Amo12g0251 513 SMART rrm2_1 310 382 IPR003954 GO:0003676
Amo12g0251 513 Gene3D - 215 295 IPR012677 -
Amo12g0251 513 MobiDBLite consensus disorder prediction 8 84 - -
Amo12g0251 513 CDD RRM_SF 136 208 - -
Amo12g0251 513 PANTHER GEO13361P1-RELATED 46 511 - -
Amo12g0251 513 SUPERFAMILY RNA-binding domain, RBD 131 299 IPR035979 GO:0003676
Amo12g0251 513 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 134 212 IPR000504 GO:0003723
Amo12g0251 513 SUPERFAMILY RNA-binding domain, RBD 305 405 IPR035979 GO:0003676
Amo12g0251 513 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 386 IPR000504 GO:0003723
Amo12g0251 513 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 279 IPR000504 GO:0003723
Amo12g0251 513 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 378 IPR000504 GO:0003723
Amo12g0251 513 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 136 206 IPR000504 GO:0003723
Amo12g0251 513 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 296 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0251 Amo-Chr12 4071418 4075891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0251 136 443 Eukaryotic Initiation Factors Gene Family AT1G71770 25.714 3.64e-17 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0251 K13161 - gmx:100800974 647.506