Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0249 ATGGGGAAGAAAGGAAGTAGTAGTAGTAGTTCATGGTTGACTGCAGTCAAAAGAGCATTCAGATCTCCAACAAAGGACACTGAAAACAAAAGAAGCAATAGGAGAAGAAGTGAAGAAAGCTTTGATCAAGAAGAAGAAGAAGAGAAGAAGAGAGAAAAGAAAAGATGGATTTTTAGAAAAGCTGTGAATCATGAAAGCAACAACAATAACAACACTAATCAACAAAACACAACAAAGTTGAAGCATAATCATAATCATGATGTGGCTACAGCAGCAACAACAGCTACTACTAATAATTGTTCTACAGCAACAACAAGTGGAGGATCAAGAAGTGAACAAGATCAAAAGCATGCTCTTGCAGTTGCTGTGGCAACAGCTGAAGCTGCCATGGCAACTGCTCAAGCTGCAGTTGAAGCTGCAAGGTTGAATAACCCCAGTAATAATACTACTAACAGTAATAATAATGGTGCTGCTAATCACCACCATCATCATGCTAGGGTGCATTATTCTGCTATAGTGATTCAAACAGCTTTTAGAGGATACTTGGCAAGAAGAGCACTAAGAGCATTGAAAGGGTTGGTGAAATTGCAAGCATTGGTAAGAGGACACAATGTAAGAAAACAAGCAAAGATGACACTAAGGTGCATGCAGGCACTTGTTAGGGTGCAAGCAAGGGTTCTTGATCAGAGAATAAGGTCTTCATCACATGATGGAAGCAGAAAATCCACATTCAGTGACACTGCTAGTGTTTGGGATCATTCCCGGTACCTTCAGGATATTTCTGATAGAAAATCACTATCAAGAGAAGGAAGCAGCATTGCAGATGATTGGGATGAACGTCCTCACACAGTTGAAGAAGTGAAGGCAATGTTGCAACAGAGAAAGGAAGCTGCCATAAAAAGGGACAAGTCCTTAACTCAAGCTTTTTCCCAGCAGATATGGAGGAATGGAAGGAAATCGTCAATTGGAAACGAAGATGAGCTTGAAGAGAGGCCTAAATGGCTTGACCGATGGATGGCCACGAAGCCTTGGGAGACAAGGGGAAGAGCTTCAACTGACCAAAGAGATCCAATTAAGACAGTAGAAATAGACACCTCGCAGCCTTACTCGTACCTTGGAACCAATTACAGGAGATCACATCCAAACTATCAATATAACCCTCACCACCATCAACCTCAAAGGCATTCCATCGCTTCACCGCTCCATAGAACACACCAAAATGGATCCCTTCACCCCTCCACTGCAACACCATCCCCGGCAAAATCTAGGTCGATACAAGTCCGGTCTGCGAGCCCTCGGTGTGTTAGAGATGATAGAAGCTACCACACTTCTCAGACACCAAGCTTGAGGTCTAATTATCATTACACCGGTAGCTTGTGTCAAAATGGCGGACGAGTAGGAACAAGTAGTGGTGGCAGCGGTACATTGCCTAATTACATGGCAGCAACCGAATCTGCGAAGGCTAGGATTCGGTCACAGAGTGCACCAAGACAGAGGCCGTCCACACCAGAGAGGGATAGAGTTGGTAGTGCAAAGAAAAGGCTCTCTTTTCCTGTTCCGCCTGATCCATATAATGTAGGAATAGGATATGGAAATTATGGCCATAGTTTAAGGAGTCCAAGTTTTAAGAGTGTGAGTGCTTCACATTTTGGGTTAGAGCAACAATCCAATTACTCTTCTTGCTGCACTGAGAGTCTTGGTGGTGAAGTTTCTCCTTCATCAACTAGTGATCTTAGAAGGTGGTTGAGGTAA 1752 0.4326 MGKKGSSSSSSWLTAVKRAFRSPTKDTENKRSNRRRSEESFDQEEEEEKKREKKRWIFRKAVNHESNNNNNTNQQNTTKLKHNHNHDVATAATTATTNNCSTATTSGGSRSEQDQKHALAVAVATAEAAMATAQAAVEAARLNNPSNNTTNSNNNGAANHHHHHARVHYSAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRIRSSSHDGSRKSTFSDTASVWDHSRYLQDISDRKSLSREGSSIADDWDERPHTVEEVKAMLQQRKEAAIKRDKSLTQAFSQQIWRNGRKSSIGNEDELEERPKWLDRWMATKPWETRGRASTDQRDPIKTVEIDTSQPYSYLGTNYRRSHPNYQYNPHHHQPQRHSIASPLHRTHQNGSLHPSTATPSPAKSRSIQVRSASPRCVRDDRSYHTSQTPSLRSNYHYTGSLCQNGGRVGTSSGGSGTLPNYMAATESAKARIRSQSAPRQRPSTPERDRVGSAKKRLSFPVPPDPYNVGIGYGNYGHSLRSPSFKSVSASHFGLEQQSNYSSCCTESLGGEVSPSSTSDLRRWLR* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0249 583 MobiDBLite consensus disorder prediction 143 163 - -
Amo12g0249 583 MobiDBLite consensus disorder prediction 345 452 - -
Amo12g0249 583 Pfam Protein of unknown function (DUF4005) 431 532 IPR025064 -
Amo12g0249 583 PANTHER PROTEIN IQ-DOMAIN 1-LIKE ISOFORM X1 7 583 - -
Amo12g0249 583 Pfam IQ calmodulin-binding motif 170 188 IPR000048 GO:0005515
Amo12g0249 583 Pfam IQ calmodulin-binding motif 194 210 IPR000048 GO:0005515
Amo12g0249 583 MobiDBLite consensus disorder prediction 21 53 - -
Amo12g0249 583 MobiDBLite consensus disorder prediction 90 113 - -
Amo12g0249 583 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 211 IPR027417 -
Amo12g0249 583 Coils Coil 123 143 - -
Amo12g0249 583 MobiDBLite consensus disorder prediction 560 583 - -
Amo12g0249 583 SMART iq_5 189 210 IPR000048 GO:0005515
Amo12g0249 583 SMART iq_5 166 188 IPR000048 GO:0005515
Amo12g0249 583 ProSiteProfiles IQ motif profile. 168 195 IPR000048 GO:0005515
Amo12g0249 583 MobiDBLite consensus disorder prediction 1 53 - -
Amo12g0249 583 MobiDBLite consensus disorder prediction 345 360 - -
Amo12g0249 583 MobiDBLite consensus disorder prediction 361 429 - -
Amo12g0249 583 ProSiteProfiles IQ motif profile. 191 218 IPR000048 GO:0005515
Amo12g0249 583 PANTHER IQ-DOMAIN 5-RELATED 7 583 - -
Amo12g0249 583 MobiDBLite consensus disorder prediction 484 520 - -
Amo12g0249 583 MobiDBLite consensus disorder prediction 1 17 - -
Amo12g0249 583 Gene3D - 164 218 - -
Amo12g0249 583 MobiDBLite consensus disorder prediction 143 158 - -
Amo12g0249 583 MobiDBLite consensus disorder prediction 90 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0249 Amo-Chr12 4030901 4033615 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0249 12 583 IQD Protein Family AT4G00820 55.254 0.0 522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0249 - - adu:107472901 996.882