Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0245 ATGCCAGAAAGCATGAGTATATCAGTGAATGGACAATCTCAAGTTCCACCTGGATTCAGGTTCCATCCAACTGAGGAAGAACTCCTTCAATACTACTTAAGGAAGAAGGTCTCTTATGAGAAGATTGATCTTGATGTTATTCGTGATGTTGATCTCAACAAGCTTGAACCATGGGACATACAAGAGAAATGTAAGATAGGAACCACCCCACAAAATGATTGGTACTTCTTCAGCCACAAAGACAAGAAGTACCCGACCGGAACCCGGACGAATAGAGCGACCGCGGCCGGGTTCTGGAAGGCCACCGGCCGTGACAAGGTGATATATAGCAACGGGAAGAGGATTGGAATGAGGAAGACGTTGGTATTCTACAAAGGAAGAGCCCCTCATGGCCAAAAATCTGATTGGATCATGCATGAGTATAGGCTTGATGATAACACCACCAACGATGCCAATATTGTTTCAAATGTGATGGGAGATGCAGCACAAGAAGAAGGGTGGGTGGTGTGTAGAATATTCAAGAAGAAGAACCATCTAAAAACCCTAGATAGTCCTTTAACCTCTTCCATCTCTGGCGACGGAGGTAGGAGGAGCCACCACCACCACCACCTATTCGACTCGTGCGACGAGGGCGCCTTAGAGCAAATTCTCCAACAAATGGGAAGAGGTGGTGGTGGTGGTTGCAAGGAAGAGATCAACAACTATGATCAATCTAACAACAACAACAACAATAATAACAACAACTATGGTGGATCATCATCGTTAACAACAAGGTATGCAAGACCTTTTGACACAATCAACAACAATGTTGATAGCAGGTTCTTGAAGCTCCCAAGCCTAGAGAGTCCAAAATCAACAAGCATGGATCATAACAATAATAACAACAATGATAATGATGATAGCAATGAAAATAATGGGTACCATCCTATTATTCCAGTTGAGATGGTAACTGAAAACGAAGGGTCATTCACATGTGACAATCCCAACAACATGTTTCATCATCACCATTTGGGTGGTGGCGGTGGCGGCGGCAGCGACGGCGGTGGCGGTCTTACAAATTGGGTAGCGCTAGATAGGCTTGTTGCTTCTCAGCTTAACGGTCAGACCGAAGCTTCTAGACAACTCTCTTGCTTCAATGACCCCACCATGGGGTATGGCACTGGAAATCATGATCTTCTATTTCCAACCGTCAGATCTACTTCATCGTTGACGTCATCGTCAGCGTCAATAAATCCAAGGGCTGTTATTAGTGCGGGTGCAGGTGCATACATTTCTCCAGGCGCACAGGATTATACCACCACAAGCGAGATTGACCTGTGGAACTTTGCTAGATCCACTTCTTCGTTGTTGTCATCCTCTGAGCCATTGTGCCACGTGTCAAACACGTCAGTGTAG 1395 0.4538 MPESMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNTTNDANIVSNVMGDAAQEEGWVVCRIFKKKNHLKTLDSPLTSSISGDGGRRSHHHHHLFDSCDEGALEQILQQMGRGGGGGCKEEINNYDQSNNNNNNNNNNYGGSSSLTTRYARPFDTINNNVDSRFLKLPSLESPKSTSMDHNNNNNNDNDDSNENNGYHPIIPVEMVTENEGSFTCDNPNNMFHHHHLGGGGGGGSDGGGGLTNWVALDRLVASQLNGQTEASRQLSCFNDPTMGYGTGNHDLLFPTVRSTSSLTSSSASINPRAVISAGAGAYISPGAQDYTTTSEIDLWNFARSTSSLLSSSEPLCHVSNTSV* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0245 464 MobiDBLite consensus disorder prediction 232 256 - -
Amo12g0245 464 MobiDBLite consensus disorder prediction 280 305 - -
Amo12g0245 464 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Amo12g0245 464 PANTHER NAC DOMAIN-CONTAINING PROTEIN 12 9 392 - -
Amo12g0245 464 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 9 392 - -
Amo12g0245 464 MobiDBLite consensus disorder prediction 280 308 - -
Amo12g0245 464 Gene3D NAC domain 24 180 IPR036093 GO:0003677|GO:0006355
Amo12g0245 464 MobiDBLite consensus disorder prediction 221 256 - -
Amo12g0245 464 ProSiteProfiles NAC domain profile. 15 175 IPR003441 GO:0003677|GO:0006355
Amo12g0245 464 SUPERFAMILY NAC domain 10 175 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0245 Amo-Chr12 3867937 3870510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0245 1 463 NAC Transcription Factor Family AT2G46770 52.026 1.39e-134 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo12g0245 NAM 4.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0245 - - ahf:112734309 822.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0245 12 3867937 3870510 Amo12g0245 12 3867937 3870510 ECH