Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0229 ACTATTGGCGAGGGAAGCTTTGCGAAGGTCAAAATTGCAAGAAACGTTGATAATGGCCAAAGTGCTGCCATTAAGATCCTCGTCAAAAATCAGATTGTGAAACACCCTAGGATGATGGAACAGCTGAAGAAGGAAATCTCTACGATGAAGATGGTCCAACATCCGAACGTGATCAAAATTTATGAGGTGATGGCAAGCAAAACAAAGATTTACATTGTCTTAGAGTTGATCAAGGGAGGAGAACTGAAAATTGCCAGAAAAGGGAGACTAGAAGAAAATGAAGCAAGAAGCTATTTTCATCAATTAATCAATGCAGTTGATTATTGCCACAGTAGAGGAGTTTATCATAGAGATTTGAAGCCTGAAAATCTTCTTCTGGACAAAAAAGATATTCTTAAAGTTTCAGATTTCGGATTGAGCACATTCGTACAGCGAGAGGATAAACTTCTGCACACTACCTGCGGAACCCCTAATTATGTTGCACCTGAGGTGATCCATAATGGAGGTTATGATGGTTCTGCATCTGATATATGGTCTTGTGGAGTCATTCTCTTTGTACTCATGGCTGGATACTTGCCTTTTGATGAACCAAATCAAATTGCACTTTTCAGAAAAGCTGAATATGTTTTTCCACCGTGGTTTTCGAAGGAGGCAAAGAAACTACTAACTCGCATTCTTGATCCAAATCCTCTCACAAGGATAAAAATTTCAGAGATATTACAAGATGAATGGTTTAGAAAAGGATACAAGCCACCAATATTTAAAGAGGAAGAAGATATAAATACAGACGATGTGACTGCTGCTTTTGATGATTCTAGGGAAAATCTGGTGACAGAAACAAAAGAGAAACCGGCCTCACTGAATGCTTTTGAGCTCATTTCAAGATCAAAGAACTTTAACCTTGAAAGTATGTTTGAGGAGAAATCACTAGGAATGGTGAAGAGAGAAACACATTTTACCTCACAGTGCCCTCCAAATGAAATTATGTCTAAAATTGAGGAAGCTGCCAAGCCTCTTGGATTCAATGTTCACAAGCACAATTATAAGATGAAGTTGCAAGGTGATAAGAGTGGAAGGAAGGGGCACCTTTCAGTGGCTACTGAGGTTTTCGAGGTAGCACCCTCCTTGCACGTGGTGGAATTGCGAAAAACAGGGGGAGATACGTTGGAGTTTCACAAGGCATGTGTTTAA 1191 0.3963 TIGEGSFAKVKIARNVDNGQSAAIKILVKNQIVKHPRMMEQLKKEISTMKMVQHPNVIKIYEVMASKTKIYIVLELIKGGELKIARKGRLEENEARSYFHQLINAVDYCHSRGVYHRDLKPENLLLDKKDILKVSDFGLSTFVQREDKLLHTTCGTPNYVAPEVIHNGGYDGSASDIWSCGVILFVLMAGYLPFDEPNQIALFRKAEYVFPPWFSKEAKKLLTRILDPNPLTRIKISEILQDEWFRKGYKPPIFKEEEDINTDDVTAAFDDSRENLVTETKEKPASLNAFELISRSKNFNLESMFEEKSLGMVKRETHFTSQCPPNEIMSKIEEAAKPLGFNVHKHNYKMKLQGDKSGRKGHLSVATEVFEVAPSLHVVELRKTGGDTLEFHKACV* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0229 396 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 1 393 - -
Amo12g0229 396 SUPERFAMILY Protein kinase-like (PK-like) 1 275 IPR011009 -
Amo12g0229 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 114 126 IPR008271 GO:0004672|GO:0006468
Amo12g0229 396 Gene3D Phosphorylase Kinase; domain 1 1 76 - -
Amo12g0229 396 ProSiteProfiles NAF domain profile. 282 306 IPR018451 GO:0007165
Amo12g0229 396 SMART serkin_6 1 245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g0229 396 PANTHER - 1 393 - -
Amo12g0229 396 Gene3D Kinase associated domain 1, KA1 281 396 - -
Amo12g0229 396 Gene3D Transferase(Phosphotransferase) domain 1 78 273 - -
Amo12g0229 396 CDD CIPK_C 288 395 - -
Amo12g0229 396 Pfam NAF domain 284 345 IPR004041 GO:0007165
Amo12g0229 396 ProSitePatterns Protein kinases ATP-binding region signature. 2 25 IPR017441 GO:0005524
Amo12g0229 396 ProSiteProfiles Protein kinase domain profile. 1 245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g0229 396 Pfam Protein kinase domain 2 245 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0229 Amo-Chr12 3586774 3596516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0229 1 395 CBL-interacting serine-threonine protein kinases AT1G01140 70.471 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Amo12g0229 Pkinase 1.3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0229 - - lja:Lj3g3v2483040.1 629.787