Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0227 ATGGAAGAGTTGATAATTTCACCTTCTTCATCTTCATCTCTAGTTTCTACCACAACTCCATCATCATCAACAACACAAATGCTTCAACAAAACCTTCAGTTCCTTCTCCAATCGCAACCAAGCTGGTGGGTCTACGCCATCTTCTGGAGCACCACGAAGGACGACAATGGCAACCTCTACCTAGCTTGGGGTGAAGGCCATTTCCAAGGCAACACCAMCRAACACACCAAAACGCAACAACAACACAACCAAAACGACGCCGAATGGTTCTACGTCATGTCGTTGACCAGAACCTTCYCCATAGCAAACTCTTCCTCTTCTTCTCTACCCGGTAARGCTTTTGCTTTGGGTTCAGTCCTTTGGCTCAACAGCAAAGAAGAGCTTCAATTCTATAACTGCGAGAGAGCCAAAGAAGCTCACGCTCACGGCATCGAAACCTTGATCTGTATTCCAACCTCAAACGGCGTCGTTGAGATGGGTTCTTACAACACCATCCCTCAGAACTGGAACCTCATCAACCATGTCAAGTCCGTCTTCGAAGACTCCATGGTCAACAACAACAACAATAACAATAACCACTGTAGCAATAACAATCTCCACAGCACGGTTCAGCAAATCTTCGAGGACAACGATGACTTTTCCTTCGCCGAGATCAGTTTCATGGCCGGTCTCGAAGAAGGCAGAGAACAAGGCATTTCACGAAAGCAGGCGGACGTAACCGTCCCTTTCAACAAAGAAAGCAAGGATTCGTACGCCGAGTCGGAGCACTCAGACTCCGACTGTCCTTTTCTAAAAACAGAAAATACTGAAAATAAAAACAAATTAGAAGCTCCAAAGAGCAAGAGAGGCAGGAAGCCGGTCCTCAACCGCGAAACGCCGGTGAATCACGTGGAGGCGGAGAGGCAACGGAGGGAGAAACTAAACCACCGATTCTACGCCTTGCGAGCGGTGGTTCCGAACGTTTCGAGGATGGACAAGGCTTCTTTATTGTCCGACGCCGTTGCTTACATCAACGAGTTGAAGGCGAAGATCAAAGATCTTGAATCCGAGAAAGATAACTATCAGCGCAAGAAAAAGGTGAAGCTCGAATCCGGTGATACTATGGACAATCAAAGCACGGTGACTAATTCCTCAACCGTAGTGGATCAAGAGAAATGTAGCAATGGCGTTGTTGCTGAGGTGGATGTGAAGATCATAGGGGACGATGCCATGGTTAGGGTTCAAAGTGAGAATGTGAATCACCCAGGTGCGAGACTCATGGGAGCATTGAGGGATATGGAGTTTCAAGTTCATCATGCTAGCATGACTTGTGTCAATGAATTAATGCTTCAAGATGTTGTTGGAAAAGTCCCCAGTGGAATCCTCAGAAGTGAAGAGGGTATTCGATCTGCTATTCTCATGAGGTTGGATCATATTAATTAG 1422 0.4641 MEELIISPSSSSSLVSTTTPSSSTTQMLQQNLQFLLQSQPSWWVYAIFWSTTKDDNGNLYLAWGEGHFQGNTXXHTKTQQQHNQNDAEWFYVMSLTRTFXIANSSSSSLPGKAFALGSVLWLNSKEELQFYNCERAKEAHAHGIETLICIPTSNGVVEMGSYNTIPQNWNLINHVKSVFEDSMVNNNNNNNNHCSNNNLHSTVQQIFEDNDDFSFAEISFMAGLEEGREQGISRKQADVTVPFNKESKDSYAESEHSDSDCPFLKTENTENKNKLEAPKSKRGRKPVLNRETPVNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVAYINELKAKIKDLESEKDNYQRKKKVKLESGDTMDNQSTVTNSSTVVDQEKCSNGVVAEVDVKIIGDDAMVRVQSENVNHPGARLMGALRDMEFQVHHASMTCVNELMLQDVVGKVPSGILRSEEGIRSAILMRLDHIN* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0227 473 Gene3D - 287 369 IPR036638 GO:0046983
Amo12g0227 473 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 291 357 IPR036638 GO:0046983
Amo12g0227 473 SMART finulus 297 346 IPR011598 GO:0046983
Amo12g0227 473 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 28 179 IPR025610 -
Amo12g0227 473 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 291 340 IPR011598 GO:0046983
Amo12g0227 473 PANTHER MYC 1 469 IPR045084 GO:0003700|GO:0006355
Amo12g0227 473 CDD bHLH_AtAIB_like 290 365 - -
Amo12g0227 473 Pfam Helix-loop-helix DNA-binding domain 295 340 IPR011598 GO:0046983
Amo12g0227 473 PANTHER TRANSCRIPTION FACTOR BHLH14 1 469 - -
Amo12g0227 473 Coils Coil 330 364 - -
Amo12g0227 473 MobiDBLite consensus disorder prediction 248 297 - -
Amo12g0227 473 MobiDBLite consensus disorder prediction 229 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0227 Amo-Chr12 3530585 3532336 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0227 28 450 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 33.524 2.76e-83 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo12g0227 bHLH-MYC_N 4.8e-43 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0227 - K13422 gmx:100804965 526.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0227 12 3530585 3532336 Amo12g0227 12 3530585 3532336 ECH