Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0225 ATGGGGCAGTGCTACGGCAAGACTAATCCCTCGCCGGAAACTGACGCCGCCGCGATTCCCAGCTCCGACGACCTTCCTCCGCCGTCAGTCACGCCCTCGGTGAAGAACACTCCGGCGAGAGCTTTATTGTCGCCGTGGCGGAGCCCTTACCCTCACGGAGGTGGCGTGACACCGTCTCCGGCTAGGACAGCGACGCCGAGGAGGATTTTCCGGCGGCCTTTTCCACCTCCGTCTCCCGCGAAGCATATTCGTGCGTCGTTGGCGAAGCGACTGGGGCGAGGCGCGGTGGCGGCGAGGGCAAAGGAGGGGACTATACCGGAGGAGGGAGTGGCAGCGGCGACGGCGGAGGAAGAGGAGGAGGTGCTGGATAAGAGGTTTGGATATGGAAAGAATTTTGGTGCAAAGTATGAGATTGGGAAGGAAATTGGGAAAGGGCATTTTGGTCATACTTGTTATGCAAGGTGTAAGAAAGGTGAATTCAAGGACCAAGCTGTAGCAGTTAAAATCATTTCCAAGTCTAAGATGACGACGGCGATAGCAATAGAAGATGTTCGGAGAGAGGTGAAGATCTTAAAAGCTCTATCTGGCCATAAGCATCTCATCAAATTTCATGATGCTTTTGAGGATGCCAACAATGTGTACATAGTAATGGAATTGTGTGAAGGCGGGGAGCTTCTTGACAGGATTTTGTCAAGGGGAGGGAAGTATCCGGAAGAGGATGCCAAAGCTATAGTTTTGCAGATTCTAAGCGTAGTTGCTTTTTGTCATCTTCAGGGCGTCGTGCACCGTGACCTAAAACCGGAGAATTTCCTCTTTACTTCAAAAAGTGAAGATGCTGATATGAAGCTTATTGATTTCGGTTTATCGGATTTCATCCGGACAGACGAACGACTAAATGACATTGTTGGGAGTGCATATTATGTTGCACCAGAGGTACTTCACAGGTCATATAGTGTGGAAGCAGATATATGGAGTATCGGTGTGATTACATATATCTTGTTATGTGGAAGTCGACCATTCTGGGCACGAACAGAATCTGGAATTTTCCGTTCAGTGCTCAGAGCTGATCCTAACTTTGAAGATTTACCTTGGCCTTCTGTGTCTGCGGAGGCCAAGGACTTTGTAAAGAGGCTCCTAAACAAGGACTATAGGAAAAGAATGACAGCCGTCCAAGCTCTAACTCACCCTTGGTTGAGGGATGAAAACCGCGCCATCCCTCTCGATATATTAGTTTATAAACTAGTGAAGTCCTATATACACGCAACACCATTCAGACGTGCAGCATTAAAGGCTCTTTCAAAGGCTTTGACAGAAGACGAATTTCCCTATCTTAGAGCGCAGTTCAAATTGTTGGAACCAAATCGAGACGGCCACGTATTACTCGACAATTTCAAAATGGCCCTTATACGCCATGCAACCGATGCCATGAGGGAGTCAAAGGTTCTTGATATTATACACGCGATGGAACCACTTGCATACAGAAAGATGGACTTTGAAGAATTCTGTGCAGCTGCAGTTAGCATTTATCAATTGGAATCACTTGAAAAGTGGGAAGATATTGCTTCCAATGCTTTTGAGCACTTTGAGAGAGAGGGTAACCGTGTAATTTCAGTTGAAGAATTAGCAAGAGAATTGAATCTAGGTCCTTCAGCTTATTCAGTTCTGAGAGATTGGATACGAAATAGTGATGGAAAGCTTAATTTACTTGGATATACAAAATTTTTGCATGGTGTCACTCCTCGTAGTTCAAACCCTAGACACCACCGTTAG 1770 0.4672 MGQCYGKTNPSPETDAAAIPSSDDLPPPSVTPSVKNTPARALLSPWRSPYPHGGGVTPSPARTATPRRIFRRPFPPPSPAKHIRASLAKRLGRGAVAARAKEGTIPEEGVAAATAEEEEEVLDKRFGYGKNFGAKYEIGKEIGKGHFGHTCYARCKKGEFKDQAVAVKIISKSKMTTAIAIEDVRREVKILKALSGHKHLIKFHDAFEDANNVYIVMELCEGGELLDRILSRGGKYPEEDAKAIVLQILSVVAFCHLQGVVHRDLKPENFLFTSKSEDADMKLIDFGLSDFIRTDERLNDIVGSAYYVAPEVLHRSYSVEADIWSIGVITYILLCGSRPFWARTESGIFRSVLRADPNFEDLPWPSVSAEAKDFVKRLLNKDYRKRMTAVQALTHPWLRDENRAIPLDILVYKLVKSYIHATPFRRAALKALSKALTEDEFPYLRAQFKLLEPNRDGHVLLDNFKMALIRHATDAMRESKVLDIIHAMEPLAYRKMDFEEFCAAAVSIYQLESLEKWEDIASNAFEHFEREGNRVISVEELARELNLGPSAYSVLRDWIRNSDGKLNLLGYTKFLHGVTPRSSNPRHHR* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0225 589 CDD STKc_CAMK 135 397 - -
Amo12g0225 589 SMART serkin_6 136 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g0225 589 Gene3D - 418 578 - -
Amo12g0225 589 Gene3D Phosphorylase Kinase; domain 1 132 222 - -
Amo12g0225 589 PANTHER SERINE/THREONINE-PROTEIN KINASE 44 582 - -
Amo12g0225 589 SUPERFAMILY EF-hand 424 577 IPR011992 -
Amo12g0225 589 PANTHER CDPK-RELATED KINASE 3 44 582 - -
Amo12g0225 589 ProSiteProfiles Protein kinase domain profile. 136 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g0225 589 ProSitePatterns Protein kinases ATP-binding region signature. 142 168 IPR017441 GO:0005524
Amo12g0225 589 Gene3D Transferase(Phosphotransferase) domain 1 223 417 - -
Amo12g0225 589 MobiDBLite consensus disorder prediction 1 81 - -
Amo12g0225 589 SUPERFAMILY Protein kinase-like (PK-like) 127 421 IPR011009 -
Amo12g0225 589 Pfam Protein kinase domain 136 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g0225 589 MobiDBLite consensus disorder prediction 1 16 - -
Amo12g0225 589 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0225 Amo-Chr12 3450467 3455898 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0225 33 582 EF-hand Containing Proteins AT3G50530 59.122 0.0 705
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Amo12g0225 Pkinase 3.3e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0225 - - gmx:100796256 954.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0225 12 3450467 3455898 Amo12g0225 12 3450467 3455898 ECH