Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0217 ATGACAAACTCATTTCATGAAAAATTAGGAGAAGGAAGATATGGCATTGTGTATAAAGTAAATTTAGCTGATGGTCAACAAGTGGCAGTAAAGATATTGAAGGAGTTAAAGGAAACTGTAGAAGAATTTGTAGATGAGGTCTTTATTATCATTAGTCGAACATCTTATGTGAACATTATTTCACTCTTAGGGTTTTGCTATGAAAAGAATAAAAAAAATACTGTATTTAGTCGAACATACGGTAGAATTTTTCACAAATTTGATGTATATAGTTATGACATATTAATTCTTGAAATTATTGGAGGAAGACAAAACTACAAAAATGGAGCATCGGATAATAGTGAAAATTATTTTCCTATTGGATCTATGAAGATCTTGAACAAGGAAATATTCCTACAAGGTGTTTGCTCCACAAAGAAGAAGAAAATGATATTGTCATGA 441 0.2993 MTNSFHEKLGEGRYGIVYKVNLADGQQVAVKILKELKETVEEFVDEVFIIISRTSYVNIISLLGFCYEKNKKNTVFSRTYGRIFHKFDVYSYDILILEIIGGRQNYKNGASDNSENYFPIGSMKILNKEIFLQGVCSTKKKKMILS* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0217 146 Gene3D Phosphorylase Kinase; domain 1 1 77 - -
Amo12g0217 146 PANTHER TYROSINE KINASE FAMILY PROTEIN 1 73 - -
Amo12g0217 146 SUPERFAMILY Protein kinase-like (PK-like) 5 71 IPR011009 -
Amo12g0217 146 PANTHER TYROSINE KINASE FAMILY PROTEIN 75 119 - -
Amo12g0217 146 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Amo12g0217 146 Pfam Protein tyrosine and serine/threonine kinase 5 72 IPR001245 GO:0004672|GO:0006468
Amo12g0217 146 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 73 IPR045874 GO:0004672
Amo12g0217 146 PANTHER RUST RESISTANCE KINASE LR10-RELATED 75 119 IPR045874 GO:0004672
Amo12g0217 146 ProSiteProfiles Protein kinase domain profile. 3 146 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0217 Amo-Chr12 3255931 3256684 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0217 1 76 Receptor kinase-like Gene Family AT5G38280 59.740 2.23e-20 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Amo12g0217 PK_Tyr_Ser-Thr 3e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0217 - - ahf:112729553 115.546