Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0186 ATGGAACAAGTTAGTATTGTTGGTGAGTTAATGCAAGGAAAGGAGTTAGCAAAGAAGCTCTTTGACCATTTGAATTCACCATCACCATCATTATCATCATCCTCCTCCTCTTCATCATCATCATCACATGAATCTAATGAAGCTTTGATAGAGAAGATACTTTCAACCTATGAGAAAGCACTCACCATGCTCAATAACACCAACTTCATGAAGGATTCTTCTCATTGTTCATCTTCTTCTCTTGCAAATGGCAGCACAAAAAGTGAGGTCTTGGATAAAGAGGATGTTGCAAAGCACAAACAAGTGTCCAAGAAAAGAAAGACTATGTCAATGTGGACAAAGCAAGTGAGGGTGTGTTTGGGAACAGAGCTTGATGGTTCTATGGAAGATGGCCATAGCTGGAGAAAATATGGACAGAAGGACATTCTTGGAGCCAAGTTTCCAAGAGGATATTTCAGATGTACACATAGACATGTACAAGGTTGTTTGGCCACAAAACAAGTTCAAAAATCAGATGAAGATCCAAATGTGTTGGAAATAACCTACAAAGGAAGACACACTTGCATTCAAGTTAGTCATCACTCAAAAAAACCAACAATTTCAAAACCAAACATGGCCTTATTATTAGAAGAACAAACCAAGAATCATCAACCAACACAAAAAGAGATGAAAACAGAACAACCCCATGAAACAATTCTCACATTTGGAACATCACAAGAACTTGAAGTCAAACTTGATGACTTTGACTTTGACTTTGACCCTGACACAAAGGAGAACATTTTCTCTTCACTTTGCTTCACTTCCCCATCAATAGTTTCTGAAAATGATGAAGACAACAACAAAATGTTCTCTTACATTGAAAGCTTTTCTCCTGAATTCATATCACCAACAACAAATTCAGAATCAAACAACATTTTCCACTTTAATGATGGACTAGGCCTATGTGTTCAAACCTCAGATTCTGATTTTAGTGATAATGTTTCAGCACCAACTTCATCAGTCTCTAATTCATCAATAGAAGGCTTGGATTTTCACTCCTTTGATGAAAAGGTGGATTTTGATAATTATTACTCCATAAACTCCTAG 1086 0.3674 MEQVSIVGELMQGKELAKKLFDHLNSPSPSLSSSSSSSSSSSHESNEALIEKILSTYEKALTMLNNTNFMKDSSHCSSSSLANGSTKSEVLDKEDVAKHKQVSKKRKTMSMWTKQVRVCLGTELDGSMEDGHSWRKYGQKDILGAKFPRGYFRCTHRHVQGCLATKQVQKSDEDPNVLEITYKGRHTCIQVSHHSKKPTISKPNMALLLEEQTKNHQPTQKEMKTEQPHETILTFGTSQELEVKLDDFDFDFDPDTKENIFSSLCFTSPSIVSENDEDNNKMFSYIESFSPEFISPTTNSESNNIFHFNDGLGLCVQTSDSDFSDNVSAPTSSVSNSSIEGLDFHSFDEKVDFDNYYSINS* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0186 361 Gene3D WRKY domain 100 183 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo12g0186 361 PANTHER WRKY TRANSCRIPTION FACTOR 46-RELATED 2 355 - -
Amo12g0186 361 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 2 355 IPR044810 GO:0003700
Amo12g0186 361 SUPERFAMILY WRKY DNA-binding domain 127 188 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo12g0186 361 SMART WRKY_cls 128 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo12g0186 361 MobiDBLite consensus disorder prediction 25 44 - -
Amo12g0186 361 ProSiteProfiles WRKY domain profile. 128 186 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo12g0186 361 Pfam WRKY DNA -binding domain 129 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo12g0186 361 MobiDBLite consensus disorder prediction 24 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0186 Amo-Chr12 2746075 2749261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0186 38 192 WRKY Transcription Factor Family AT5G24110 47.742 5.55e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo12g0186 WRKY 6.9e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0186 - - gmx:100170747 333.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0186 12 2746075 2749261 Amo12g0186 12 2746075 2749261 ECH
Amo16g1259 16 21498443 21499013 Amo12g0186 12 2746075 2749261 PCT
Amo12g0186 12 2746075 2749261 Amo16g1259 16 21498443 21499013 PCT