Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0177 ATGACTGAGAAAAAGTTTGTTAGATTTGAGGATTGGAGATCAGATTCAAATACAAGCATTATTGAAAAGTATGATCTATCCACTGATGGATTCTTCAAAAGAAAAGTTATAAAAAAACCAGGTGCAAGTCCTACTAATAATAAAAGTGATGGAAAAGAATCAACCAATAAAAAGTGTTCTACTAAGATCAAGGTTCTTGATCCACAAGGTCCATTGCTTCAAAAATGGAACAAAATCTTTGTGATCATATGTGTTATGGCAATTTCTGTGGACCCTCTATTCCTCTACATTCCTGTGATCAATGAAGAGAAGAAGTGCCTTAGTTTGGATAAAAGATTGGAGATTGTTGCTTGTGCTCTTAGAACATTCTTTGATCTTTTCTACATTATTAGGATCTTGTTTCAGTTTAGAACAGGGTTTATTGCACCTTCTTCACGTGTGTTTGGAAGGGGTGAGTTGATTCATGACACAAAAGCCATTGTCATCAGATACTTGTGCTCAGATTTCATCATTGATATTCTATCAATTATTCCACTTCCTCAGATGTACATCTTAGCTATCCTTCCAATACCATCAAGCACATTTCCATACAAGGTAAAGAACATGTTGAAGTTCACAATTCTAGCTCAGTATGTGCCAAGACTTCTGAGGTTGTATCTTTTATTCAAAGAAGTGACAAGCACTTGTGGTATTCTCACTGAGACAGCATGGGCTGGTGCTGCCTATAATCTTTTTCTATATATGCTTGCAAGTCATGTGGTTGGAGCTTTCTGGTACTTGTTCTCAATAGAAGCAGAGGTTAGGTGTTGGCACAAGGTGGTGAAATTTCATAATTACTCCAGTTATGTATACCTTAGCTGTGGTGGAATGGCCAACAATAATCCACAAGTTCAATTACTTTTGAGCAAGGATAATTATTGCCAGCTTGAGAACCCTGATGACATAAAAGATCAAAATGTTTTCAATTTTGGAATATATACTCAGGCTCTAATGGCTCATATTGTAGGATCAAGTACAGATTTTCCTCAGAAGTTCTTCTTCTGTTTTTGGTGGGGTTTTCGCAACTTAAGTTCTCTTGGACAAAACCTCTTGTGTAGTACTTACATTGGGGAGAATATATTTGCTATCCTCATTGCCATCTTTGGATTGGTTCTGTTCTCATCACTCATTGGAAACATGCAGAAATATCTACAATCTACAACTGTAAGAGTTGAAGAGATGAGGATCAAAAGGAGGGACGCGGAGCGGTGGATGTCGCACCGGATGCTACCGGATTGCATAAGAGAAAGGATCAGAAGGTATTTGCAGTACAAATGGCAACAGAATAGGGGTGTTGAGGAGGAAGCATTGATTAGAAACCTTCCTAAAGATCTCAGAAGAGACATTAGGCGTCATCTTTGCTTGAAATTACTTACAAGAGTGCCAATGTTTGAGAACATGAACAAACAATTGTTGGATGCAATGTGTGATAGACTGAAGCCAGTCCTTTACACAGAGAAGAGCTACATAGTTTGCGAAGGCGATCCGGTCGACGAAATGCTCTTCATTATGCGGGGAAACCTCAGAACTGCCACGACAAATGGCGGCAGAACAGGCTTCTTCAACTCCTCTGAGCTGAGAGCTGGTGACTTCTGTGGAGAAGAGCTTTTGACATGGGCCTTGGATCCAAATTGCACTCCAAGTTTACCAATTTCAACAAGAACTGTTGAAACCATATCTGAAGTTGAAGCTTTTGCTCTCATGGCTGATGACTTGAAGTTTGTTGCTTCGCAGTTTCGAAGAGTTATAAACAGCAAACAACTCCAGCATACTTTCAGATTCTACTCCTTACAATGGAAGACATGGGCAGCATGTTTCATCCAAGCAGCATGGCGAAGATACCGGAAGAAGAAAGCAGAGAGAGTGTTGCGCGAAGCCGAAGAGGTGCAATCTTTCGGAATGGAGGATGGATATAGCAACAACAGCAGCTCATCATCACCAAGCTTTGTTGCCACAGTTTATGCACAAAAGTTTGCAGCCAATGCTCTTAGACCCATAAGAAGTGGCAAACGCACCAACAAAGTTTCACCACCGACACAGAGGTTACTACCACTTCTGCCTCAGAAACCAGCTGAACCAGATTTCACCTCTCAGAAGCATTAA 2142 0.4024 MTEKKFVRFEDWRSDSNTSIIEKYDLSTDGFFKRKVIKKPGASPTNNKSDGKESTNKKCSTKIKVLDPQGPLLQKWNKIFVIICVMAISVDPLFLYIPVINEEKKCLSLDKRLEIVACALRTFFDLFYIIRILFQFRTGFIAPSSRVFGRGELIHDTKAIVIRYLCSDFIIDILSIIPLPQMYILAILPIPSSTFPYKVKNMLKFTILAQYVPRLLRLYLLFKEVTSTCGILTETAWAGAAYNLFLYMLASHVVGAFWYLFSIEAEVRCWHKVVKFHNYSSYVYLSCGGMANNNPQVQLLLSKDNYCQLENPDDIKDQNVFNFGIYTQALMAHIVGSSTDFPQKFFFCFWWGFRNLSSLGQNLLCSTYIGENIFAILIAIFGLVLFSSLIGNMQKYLQSTTVRVEEMRIKRRDAERWMSHRMLPDCIRERIRRYLQYKWQQNRGVEEEALIRNLPKDLRRDIRRHLCLKLLTRVPMFENMNKQLLDAMCDRLKPVLYTEKSYIVCEGDPVDEMLFIMRGNLRTATTNGGRTGFFNSSELRAGDFCGEELLTWALDPNCTPSLPISTRTVETISEVEAFALMADDLKFVASQFRRVINSKQLQHTFRFYSLQWKTWAACFIQAAWRRYRKKKAERVLREAEEVQSFGMEDGYSNNSSSSSPSFVATVYAQKFAANALRPIRSGKRTNKVSPPTQRLLPLLPQKPAEPDFTSQKH* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0177 713 MobiDBLite consensus disorder prediction 678 713 - -
Amo12g0177 713 SUPERFAMILY Voltage-gated potassium channels 67 398 - -
Amo12g0177 713 Gene3D Jelly Rolls 474 594 IPR014710 -
Amo12g0177 713 Gene3D Helix hairpin bin 403 467 - -
Amo12g0177 713 Pfam Ion transport protein 76 404 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Amo12g0177 713 SMART cnmp_10 476 607 IPR000595 -
Amo12g0177 713 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 5 711 - -
Amo12g0177 713 CDD CAP_ED 476 608 IPR000595 -
Amo12g0177 713 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 5 711 - -
Amo12g0177 713 SUPERFAMILY cAMP-binding domain-like 405 592 IPR018490 -
Amo12g0177 713 Gene3D - 77 400 - -
Amo12g0177 713 ProSiteProfiles cAMP/cGMP binding motif profile. 476 550 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0177 Amo-Chr12 2629087 2637978 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0177 3 710 Ion Channels AT5G53130 59.426 0.0 845
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0177 K05391 - ahf:112708046 1169.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0177 12 2629087 2637978 Amo12g0177 12 2629087 2637978 ECH