Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0176 ATGTTGAAAGATGAACGCGGAAATCATATGAAGATGCTTGAGGATTTGAGATCAGATTCATCTGTGAGTATTGAGAAGAATGATTCAGCTAGTCATGAATTCAACAAAAGATTGGTTACTAAGAGAAAAGTTCTTAATCCACATGAGCCACTACTTCAGAAATGGAACAAAATATTTGTGATCACATGTGTCATGGCAATCTTTGTGGACCATCTTTTCTTTTACATCTCAGTTATCAATGACAAGGGAAAATGCCTCAACTTGGATGAAACACTGAAGATCACCGCATGTGTCCTTCGCACATTCTTTGATCTTTTATATGTTCTTCGTATCATCTTTCAGTTTAGAACTGGGTTTATTGCCCCTTCTTCTCGAGTGTTCGGAAGGGGTGAGTTAATTGATGACAGTATTGCTATAATGAAAAGATACTTAACTTCAAATTTCATCATTGACATTCTATCAATTATTCCACTTCCACAGATGATCATCTTACCTATCATACCAGTTCCAAAACGCACTCTTCCATATCTGGCTCAGAATATGCTGAAGTACACAATAATTGTTCAGTATGTGCCAAGGCTTCTGCGGCTTTATCTACTACTCAAAGAAATAACCAACGCTTTTGGCACACTGACTGAGACGGCATGGGTTGGAGCTGCTTATAATCTTCTTCTCTGTATGCTAGCAAGTCATGTAGTTGGAGCTTTTTGGTATCTGTTTTCGGTGGAATCAGAGGTCCGGTGTTGGCACACAAAGTTGAAGCACACTAAATTCTCTGCTGAGTCCTACCTTAGCTGTGGACAACACTACAAACAAGATGTTTTATCACTTTTGAACAGCTCTAACACTTGCCCTTACATTGATATTGATCCTCAAAACAGCAAAGACCCAACAGTTTTCGATTTCGGGATATTTACACCAGCTCTGAAGTCTCATGTGGTAGAATCAACTACAGGTTTTACTCAGAAGTTCTTCTTCTGCTTTTGGTGGGGTTTGCGCAATTTAAGTTCTCTTGGGCAAAACCTCCTGGGTAGTACTTATATTTGGGAGAATATCTTTGCTATCTTTATTGCGATCTTTGGATTGGTTCTGTTCTCATCACTAATAGGAAACATGCAGAAATATCTACAATCTACAAGCGTAAGTGTTGAAGAGATGAGATTTGAAGAGATGAAAATCAAAAGGAGGGAGGTAGAGCACTGGATGTCCTACAGAATGATACCTAGCTCCTTGAAGGAAAGAATCAGAAGGTATGATAAATACAAATGGCAACAAAATAGGGGTGTTGAGGAGGAAGCATTAACTGGAAGCTTCCCTAAAGATCTCAGAAGGGACATAAAGCGCCATATTTGCTTGCGGTTAATTAGAAGAGTGCCAATGCTTGAGGCCATGAACAACCAGTTATTGGATGCAATGTGTATTAGAATGAAGCCATTCCTTTATACAGAAGACAGCTACATTGTTTGTGAAGGAGATCCAGTCGAAGAAATCCTCTTCATTATGGATGGAAGCCTTGCTTCTGTAACAACAAATGGAGGGAGATCTAGTTTCTTCAACTGTTTTCTCAAGGCTGGTGACTTTTGTGGAGAAGAGCTTTTGGCATGGGCCTTGGATCCTAACTCCTCAAATCTACCCATTTCAACTAGAACAGTACAGACTTTGACAGGAGTTGAAGCCTTTGTTCTCATGGCTGATGACTTGAAGCTTGTTGCTATTCAGTTCTATTCCCATCAATGGAGGACATGGGCTGCATGTTTCATACAAGTAGCTTGGCGTCGGTACCAGAAAAAGAAGATTGAGAAGGCATTACGTGAAGCAGAACGTGGCATACAAGCTTTTACAAGTAAGGATGGGCTTGATGATGAGAGGTCAACATCATCAAATGATTCTACTGATGTTGGATTTCACAATAGAAAACATAAATCAAGAGTAAGTCTATCAAGTGATGGACCAATAAAAAAGGTGGTTACAAGGATCAAAGTTCTTGACCCACAGGGATCACTACTTCAGAAATGGAACAAAATTTTTGTGATCACAAGTGTGATGGCAATATCTGTTGACCCTCTTTTCTTTTACATCCCATTTAGAACTGGGTTTATTGCTCCTTCTTCTCGCGTATTTGTAAGGGGTATGCTGGTTGATGACACTGGTGCTATAATCAAAAGATACTTAAGTTCACATTTTTTCATTGACATTCTATCAATCATTCCACTTCCACAGATGGTCATCTTAGCTATTGTTCCAATCCCAAGATGCTCAGTTCCATACATGGTAAAGAATTTGTTGAAGTACACAGTAATATCTCAGTATGTACCAAGACTTCTGCGACTCTATCAGTTATTCAAAGAAGAAACAAAAACTTGGGGGGCATTAACTGAGACAGCATGGTTCGGAGCTGCTTATAATCTTCTTCTTTATATCGTTGCAAGTCATGTTCGCTGTTGGCAGGGACAGTTGAAACATACTAATTTCTCTACCGAATCCTACCTTAGCTGTGGACAATACTATAAGCAAGATGTTCTATCACTGCTGAATAGTTCTATTTCTTGCCCTTACATTGATACTGAAAACAACATAGATCCAACAGTTTTTGACTTTGGAATATTTACACCAGCTCTACAATCTCGTGTGATAGAATCAACCACAGACTTCACTCAGAAGTTCTTCTTCTGCTTTTGGTGGGGTTTGCGCAATCTAATTGCTCTTGGGCAAACCCTCCTGTGTAGTACTTATATTTGGGAGAATATCTTTGCTATCATCATAGCCATCTTTGGGCTGGTTCTGTTCTGTTCACTTATAGCAAACGTACAGAAATATCTACAATCCGCAACTGTAAAAGTTGAAGACATGAGATTTGAGGAGATTAAATTCAAGAGGAGGGATGTAGAGCGGTGGATATCCCACCGTAAGCTACCAAAAAACTTGAAGGAAAGAATTAAAAGGTATGAACAATACAAATGGCAAGAAAACAAGGGTCTTGAGGAGGAAGACTTAATTGCAAACCTCCCCAAAGATCTCCGAAGGGACATAAAGCGTCATCTTTGCTTGCACTTACTTAAAAAAGTGCCAATGCTTGAGAATGTGGACAAGAGGTTGTTGGATGGCATGTGTGATAGACTGAAGCCAGTCCTTTACACGGAGAAGAGCAACATTGTTTACAAAGGAGATCTGATTGATGAAATGATCTTTATTATGAGTGGAAAACTTGCTAGTACCACAGCAAATGATGGAAGATCTAGTTCTGTCAAATCCTTGCTCTCGGCTGGTGACTTTTGTGGAGAAGAGCTTCTAACATGGGCCTTGAGTCCTAACTCCTTAGATCTACCATTACCAATTTCAAATAGAACAGTAGACACTATATCAGAAGTTGAAGCATTTGCTCTATTGGCTGATGACTTGAAGTTTGTTGTATCTCAATTTCGAAATCTTATAAATAGCAAACAACTCGAGCAAACTTTAAGGCAAGGCTTGACAATACATATAGAATTCAAAACCTTATTCAGCAATGTGTCTCCAGGTTCTTCTCCCAGCAGTGGAGGACGTGGGCTGCATGCTGAGAGGGCCTCTTGTGAAGCAGAAGAACTAGATGCTTTTGCAAATCAGGATGGGCATGCATCTTCACCAAGCTCTGCCACATCTGTATATGTATCAAGGTTTGAGGATCAGAGATTAGAGTCAACTGCAATAACTGAGAAGAGTGGTTGCATTAGTGAGAAATTTCTAAAAACAAAAGTTAAATCATGTTTGAGTCTAGCAAGTGATGGACCAACCATAAAGTTGACTATTTGGAGCCAAGTTCTTGATCCACAGGGGCCACTATTTCAGAAATGGAACAAAATTTTTCTAATCACATGTGTGATGGCAATATATGTGGACCCTCTTTTCTTTTACCTCCCAGTGATCAATGACACAGAGAAATGCCTTAGGTTGGATGAAAAACTAAAGATCACTGCTTGTGTTCTTCGCACACTCTTGGATCTTTTATACATTCTTAGGATCATAATTCAGTTTAGAGCAGGGTTTATTGCACCTTCTTCATGTATGTTGGGAAGGGGTGAGCTGATTGATGAGACTACTACCACTGTGAAGAAATACTTGCGTTCAGATTTCATTATTGATATTCTATCAATTATTCCACTTCCACAGATGGTCACCTTAGCTATCATTCCAATCCCAAATTGCTCAGTTCCATACATGGCAAAGAACTTGCTGAAGTACACAATAATAGTTCAGTATGTGCCAAGAGTTTTGCGACTCTCTCTGTTATTCAAAGAAGTAACCAGAACTTATGGCATACTGACCAAGACAGCATGGTCAGGAGCAGCCTTTAATCTTTTCATTTACATGCTAGCAAGTCATGGAATTGGAGCTTTTTGGTATCTACTTTCAGTAGAATCAGAGGTTCGATGTTGGCAGACACACTTGAAACATAATAAATACTCCACTGCATCCTACCTTAGCTGTGGACAACACTACAAGCAAGATGTTCTATCACTTTTGAACACTTCAACATGCGCTCATGTTGATCCTGATAATAGTACAGATTCAACAGTTTTCAATTTCGGTATTTTTACAACAGCTTTACAATCACGCGTGGTTGAATCGGTTACAGAGTTTCCTCAGAAGTTCTTCTTCTGCTTCTGGTGGGGTTTCTGCAATCTAAGTTCTCTTGGGCAGAACCTTCAATGCAGTACTTACATTTGGGAGAATATCTTTGCTATCTTCATTGCCGTATTGGGATTGATTCTGTTCTCATCACTTATAGGAATCATGCAGAAATATCTACAATCTACATCCCTAAGAGTCGAAGAGATAAGATTTGATGAGATGAAATTCAAAAGAAGAGACATAGAGCGCTGGATGTCCCACCGCATGCTACCAGACACTTTGAAGGAAAGAATTAGGAGGTATGAACAATACAAGTGGCAACAAAATAGGGGTGTTGAGGAGGAAGGAATAATTGGCAGTCTCCCTAAAGATCTCAGAATGGACATAAAGCGTCATCTCTGCTCGGATTTACTTAGAAGAGTACCAATCCTTGAGATCATGGACAGACATCTACTGGATGCCATGTGTGCCAGATTAAAGCCAGTCCTTTATACAGAGAACAGCAGAATTGTTTGCAAAGGAGATCTGATTGATGAAATGCTCTTTATTATACGCGGACAACTTGCTTGTGCCACAACAAATGTTTTCTTCAAGGCTGGTGACTTCTGTGGAGAAGAGCTTATTACGTGGGCCTTTTATCCGAACTCCTCAAATCAATTACCCATTTCAAGAAGATCAATTGAAACAATAACAGAAGTTGAAGCTTCTGTTCTCATGGCTGATGACTTGAAGTTTGTTTTTTCACAATTTCAAGACCTTAATAAAAACAACGAAAAGATCCGTTCTTTTCCCCGCAATGGAGGACATGGGCTGCATGTTTCATACAAGCAGCTTGGCGTCAGCATCGAAAAAAAGAAGGCAAAGAGAGCATACATGAAGCACAAGAGCTGCATGCTATTGCAAGCGAGCAATGGTGTAGCTCCTCAGTAA 5538 0.3965 MLKDERGNHMKMLEDLRSDSSVSIEKNDSASHEFNKRLVTKRKVLNPHEPLLQKWNKIFVITCVMAIFVDHLFFYISVINDKGKCLNLDETLKITACVLRTFFDLLYVLRIIFQFRTGFIAPSSRVFGRGELIDDSIAIMKRYLTSNFIIDILSIIPLPQMIILPIIPVPKRTLPYLAQNMLKYTIIVQYVPRLLRLYLLLKEITNAFGTLTETAWVGAAYNLLLCMLASHVVGAFWYLFSVESEVRCWHTKLKHTKFSAESYLSCGQHYKQDVLSLLNSSNTCPYIDIDPQNSKDPTVFDFGIFTPALKSHVVESTTGFTQKFFFCFWWGLRNLSSLGQNLLGSTYIWENIFAIFIAIFGLVLFSSLIGNMQKYLQSTSVSVEEMRFEEMKIKRREVEHWMSYRMIPSSLKERIRRYDKYKWQQNRGVEEEALTGSFPKDLRRDIKRHICLRLIRRVPMLEAMNNQLLDAMCIRMKPFLYTEDSYIVCEGDPVEEILFIMDGSLASVTTNGGRSSFFNCFLKAGDFCGEELLAWALDPNSSNLPISTRTVQTLTGVEAFVLMADDLKLVAIQFYSHQWRTWAACFIQVAWRRYQKKKIEKALREAERGIQAFTSKDGLDDERSTSSNDSTDVGFHNRKHKSRVSLSSDGPIKKVVTRIKVLDPQGSLLQKWNKIFVITSVMAISVDPLFFYIPFRTGFIAPSSRVFVRGMLVDDTGAIIKRYLSSHFFIDILSIIPLPQMVILAIVPIPRCSVPYMVKNLLKYTVISQYVPRLLRLYQLFKEETKTWGALTETAWFGAAYNLLLYIVASHVRCWQGQLKHTNFSTESYLSCGQYYKQDVLSLLNSSISCPYIDTENNIDPTVFDFGIFTPALQSRVIESTTDFTQKFFFCFWWGLRNLIALGQTLLCSTYIWENIFAIIIAIFGLVLFCSLIANVQKYLQSATVKVEDMRFEEIKFKRRDVERWISHRKLPKNLKERIKRYEQYKWQENKGLEEEDLIANLPKDLRRDIKRHLCLHLLKKVPMLENVDKRLLDGMCDRLKPVLYTEKSNIVYKGDLIDEMIFIMSGKLASTTANDGRSSSVKSLLSAGDFCGEELLTWALSPNSLDLPLPISNRTVDTISEVEAFALLADDLKFVVSQFRNLINSKQLEQTLRQGLTIHIEFKTLFSNVSPGSSPSSGGRGLHAERASCEAEELDAFANQDGHASSPSSATSVYVSRFEDQRLESTAITEKSGCISEKFLKTKVKSCLSLASDGPTIKLTIWSQVLDPQGPLFQKWNKIFLITCVMAIYVDPLFFYLPVINDTEKCLRLDEKLKITACVLRTLLDLLYILRIIIQFRAGFIAPSSCMLGRGELIDETTTTVKKYLRSDFIIDILSIIPLPQMVTLAIIPIPNCSVPYMAKNLLKYTIIVQYVPRVLRLSLLFKEVTRTYGILTKTAWSGAAFNLFIYMLASHGIGAFWYLLSVESEVRCWQTHLKHNKYSTASYLSCGQHYKQDVLSLLNTSTCAHVDPDNSTDSTVFNFGIFTTALQSRVVESVTEFPQKFFFCFWWGFCNLSSLGQNLQCSTYIWENIFAIFIAVLGLILFSSLIGIMQKYLQSTSLRVEEIRFDEMKFKRRDIERWMSHRMLPDTLKERIRRYEQYKWQQNRGVEEEGIIGSLPKDLRMDIKRHLCSDLLRRVPILEIMDRHLLDAMCARLKPVLYTENSRIVCKGDLIDEMLFIIRGQLACATTNVFFKAGDFCGEELITWAFYPNSSNQLPISRRSIETITEVEASVLMADDLKFVFSQFQDLNKNNEKIRSFPRNGGHGLHVSYKQLGVSIEKKKAKRAYMKHKSCMLLQASNGVAPQ* 1846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0176 1845 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 1236 1792 - -
Amo12g0176 1845 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1236 1792 - -
Amo12g0176 1845 Coils Coil 596 616 - -
Amo12g0176 1845 CDD CAP_ED 1679 1789 IPR000595 -
Amo12g0176 1845 CDD CAP_ED 1024 1143 IPR000595 -
Amo12g0176 1845 MobiDBLite consensus disorder prediction 617 636 - -
Amo12g0176 1845 ProSiteProfiles cAMP/cGMP binding motif profile. 460 544 IPR000595 -
Amo12g0176 1845 SMART cnmp_10 460 589 IPR000595 -
Amo12g0176 1845 SMART cnmp_10 1679 1801 IPR000595 -
Amo12g0176 1845 SMART cnmp_10 1024 1155 IPR000595 -
Amo12g0176 1845 ProSiteProfiles cAMP/cGMP binding motif profile. 1024 1105 IPR000595 -
Amo12g0176 1845 SUPERFAMILY cAMP-binding domain-like 1609 1790 IPR018490 -
Amo12g0176 1845 SUPERFAMILY Voltage-gated potassium channels 663 941 - -
Amo12g0176 1845 SUPERFAMILY Voltage-gated potassium channels 47 377 - -
Amo12g0176 1845 Pfam Ion transport protein 55 381 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Amo12g0176 1845 Pfam Ion transport protein 672 947 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Amo12g0176 1845 Pfam Ion transport protein 1277 1601 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Amo12g0176 1845 Gene3D - 1280 1598 - -
Amo12g0176 1845 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 695 1224 - -
Amo12g0176 1845 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 628 694 - -
Amo12g0176 1845 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 628 694 - -
Amo12g0176 1845 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 18 617 - -
Amo12g0176 1845 Gene3D Helix hairpin bin 387 451 - -
Amo12g0176 1845 Gene3D Helix hairpin bin 949 1015 - -
Amo12g0176 1845 Gene3D Helix hairpin bin 1607 1670 - -
Amo12g0176 1845 CDD CAP_ED 460 567 IPR000595 -
Amo12g0176 1845 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 18 617 - -
Amo12g0176 1845 ProSiteProfiles cAMP/cGMP binding motif profile. 1679 1754 IPR000595 -
Amo12g0176 1845 SUPERFAMILY cAMP-binding domain-like 389 571 IPR018490 -
Amo12g0176 1845 Gene3D - 57 379 - -
Amo12g0176 1845 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 695 1224 - -
Amo12g0176 1845 Gene3D Jelly Rolls 1677 1788 IPR014710 -
Amo12g0176 1845 Gene3D Jelly Rolls 1022 1142 IPR014710 -
Amo12g0176 1845 Gene3D Jelly Rolls 458 575 IPR014710 -
Amo12g0176 1845 SUPERFAMILY Voltage-gated potassium channels 1268 1596 - -
Amo12g0176 1845 SUPERFAMILY cAMP-binding domain-like 954 1140 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0176 Amo-Chr12 2606722 2624617 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0176 18 594 Ion Channels AT5G53130 57.454 0.0 686
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0176 K05391 - ahf:112708046 2840.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1267 16 21713022 21718265 Amo12g0176 12 2606722 2624617 PCT
Amo12g0176 12 2606722 2624617 Amo16g1267 16 21713022 21718265 PCT