Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0174 ATGTCCCTGAAGAAAGGCAAAAATGACGACAGGAGGAGTGCTCAGCTCAAAGGAAAAGTGAAGCCGAGTAGCCCCTCAGCAAGCTGGCGTAAGAGTAGGGAAGTGGAGGCTGTGAGGATGTTGGAAGCATGTTGGATAGTAGATGTGGTGGTAATAATGGCATCAAGTAGCAAGTTTTGCAAGGATGCGTGTATGTGGAATGAGCCTCTTGTGGACAACTGGATGGAGGGCAATGCTGGTGTGTCGAATCCACAGCTGGGTGGTATTGTTCATGGAGTTGGTTTTACTCTTAGCAGGGGTGAGGGTTATGCTAATGCATTCCACATAATGGCAGCTGGTAGCATAATGTTTGTCTTCTTATTTCAGGACACAATGTATGATACCAGAGTGGAGGAAGATGCTGAGTCATCCGATTGGGAAGGTAGGGGGGCTTCAATGTTGCCCGTTTTTTTGGGTTTGGATGGGTTGCGAGCTGAAGATGTTCTTGAAATGGAGTTCTCTTCACCTCAGGAGGCTAGCGGCTTCTATAACAATTACAGCCGACTAAAGGGCTTTGCATCAAGGCGAGGCAAGACGGTTAGAAACACTGCCGGAGAGATAGTGCGGTACACGTTTGTTTGTAATAGGCAAGGATTTCGAGAGAAGAAATGGTTGGAAAAGGTTGATCGCAAAAGGGAGCATAAGGCTGTAACCCGATGTGGATGTTTGGCGGAGATGAGGATAAAGAGGAAAGAGGGTAGTGGGAGGTGGTATGTGTCGCGTTTTGTCGAGGAGCATAACCACGAACTTGCGTATGGGAAGCTTGTTGATTATCTGCGGTCACACAGGAAGATATCTGAGGTAGAAGTTGCTCAGCTAACAAGCATGAGAGAGATTGGGATTAGCATACCTAAGATTTATGAGTCCTTCGCAGCACAACTAGGGGGTTTTAACCTGTCAATGGTCAATGAGTGCGGTGTCAGGGAGGTTGAGTGGGTTAAGGACTTGTACACCAAAAAGCACGCTTGGGCAACCGCATACATTCGTGGTAGATTTTTTGCTGGAGTACGGACAACCTCTAGGTGCGAGTCACTACACGCCAAACTAGGGAGGTTTGTTGAGAGCAGGTACGGGGTGTTAGAATTTGTCAGAAATTTTCAAAGGTGTGTGGATTTTCTGCGTGACACCGAGGATGAGCTAGACTTTCGTTCATGGTACGGAACACCTGTGCTACAAACGGAGTTCGTTGAGCTGGAAAAGTCTGGATGGACTATGTTCACCCGCGAAATGTTTCTCAGATACCGGGATAGCCTGAAACGGTGTGTTCGTGTTAGAATATGTGAATTTGATGACAGTGACAACCCTCATGCATATACTCTTCAGAAGTATCGGAGGCCTGAGATGAATTGGAAGGTTTATAGGGACCATATCTCGAACAGATTTACTTGCAGCTGCATGCGTATGGAGTCGTTTGGCATTCCTTGTGTGCATATCCTTTCCGTTTGTGTAAGGCTAGACTTGGTGGAAATCCCTGAAAGCCTGGTGCTGCGTAGGTGGTCTAAGGCAGCCAAATTGGAGATACATAACCAATGTGGTGAGCAACACACTGCTGAACCAAGTGTGACCTATAGGACACGATTGGGTGCTTTCTCCCAGCTGTGTAAGCGTTTAGGGCGCGTTGCTTGCATGAGCGATGAAGACTTCAAGCTTTACTCAAACAAGCTTATGAGCGATGCTCTGTTCCTTGAAATAAAGTACGGCTTAAGACCATTAACGGATAATATGACAACAGCAAATGATTGCGGGGTGAAGGACCCCATTCGTGTCAGGACAAAAGGCACGGCTCGGATGAGTCAAGCAGGCGGTTCTGCGCCGAAAACGAAAAGAAAGTGCAGCACATGCGGGAAGCTCGGGCACCGGAGGACTAGATGCCCCAACGGAGGCGCGCAACCTTCAACGAGGAACAAAGAATCACTTGCTGGGAGAAATAAACGCAAGCGAACGAAGGTACCCGTCGTTGTCCCAGATAATTGTCCGCCTGAAAATGCATGTCAAGCTGGATGCGACTTATGGGAACAATTTTCGCTTGCAGACCCATGA 2079 0.4781 MSLKKGKNDDRRSAQLKGKVKPSSPSASWRKSREVEAVRMLEACWIVDVVVIMASSSKFCKDACMWNEPLVDNWMEGNAGVSNPQLGGIVHGVGFTLSRGEGYANAFHIMAAGSIMFVFLFQDTMYDTRVEEDAESSDWEGRGASMLPVFLGLDGLRAEDVLEMEFSSPQEASGFYNNYSRLKGFASRRGKTVRNTAGEIVRYTFVCNRQGFREKKWLEKVDRKREHKAVTRCGCLAEMRIKRKEGSGRWYVSRFVEEHNHELAYGKLVDYLRSHRKISEVEVAQLTSMREIGISIPKIYESFAAQLGGFNLSMVNECGVREVEWVKDLYTKKHAWATAYIRGRFFAGVRTTSRCESLHAKLGRFVESRYGVLEFVRNFQRCVDFLRDTEDELDFRSWYGTPVLQTEFVELEKSGWTMFTREMFLRYRDSLKRCVRVRICEFDDSDNPHAYTLQKYRRPEMNWKVYRDHISNRFTCSCMRMESFGIPCVHILSVCVRLDLVEIPESLVLRRWSKAAKLEIHNQCGEQHTAEPSVTYRTRLGAFSQLCKRLGRVACMSDEDFKLYSNKLMSDALFLEIKYGLRPLTDNMTTANDCGVKDPIRVRTKGTARMSQAGGSAPKTKRKCSTCGKLGHRRTRCPNGGAQPSTRNKESLAGRNKRKRTKVPVVVPDNCPPENACQAGCDLWEQFSLADP* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0174 692 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 312 520 - -
Amo12g0174 692 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 144 280 - -
Amo12g0174 692 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 144 280 IPR031052 GO:0006355
Amo12g0174 692 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 312 520 IPR031052 GO:0006355
Amo12g0174 692 ProSiteProfiles Zinc finger SWIM-type profile. 466 499 IPR007527 GO:0008270
Amo12g0174 692 SMART 26again6 474 501 IPR006564 GO:0008270
Amo12g0174 692 MobiDBLite consensus disorder prediction 605 664 - -
Amo12g0174 692 Pfam FAR1 DNA-binding domain 175 264 IPR004330 -
Amo12g0174 692 MobiDBLite consensus disorder prediction 1 17 - -
Amo12g0174 692 MobiDBLite consensus disorder prediction 1 28 - -
Amo12g0174 692 ProSiteProfiles Zinc finger CCHC-type profile. 622 639 IPR001878 GO:0003676|GO:0008270
Amo12g0174 692 SUPERFAMILY Retrovirus zinc finger-like domains 604 641 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0174 Amo-Chr12 2577663 2582095 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo12g0174 FAR1 2.6e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0174 - - adu:107487706 769.615