Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0173 ATGGGAACCCTAACGAAGAAGATTCTTTCTCTTTTCTTCATCTACCCTGTAATATTAGCTTCTGACTGCGAATTTTCTTGGTGTGAAAGCATGCTCATTCGTTTCCCCTTTCAACTTCAAAGCAACCAGCTTCAACATCCTTATTGTGGTTACCCTGGTTTCAAATTAATCTGCACCAATGACGCCAAAACAGTTCTAGATCTTCCATTCTCTGGAGAATTCTATGTACGCAACATAAACTATCTAACACAGCAGATACAAGTCTATGACCCTGATCAGTGCCTTCCAAAACGTCTTCTAAGCCTCAATCTTTCGGGTACCCCCTTCATTGCCATGTTGAGTCGCAACTACACTTTCTTAAGCTGCAATTCTCGCAACGCAGCGTCGCGGTCCGTTCCCATTGATTGTCTTAGCAATTCAACATATTTTGTATCTGCTGTGCCTTCAGGGGACTTGGCCAATAATTCATTGCCAGTTTCATGCAAAGTTATTGGAAGGCTTTCAGTTCCATTTTCAAGCACAACGTTTGTGAGGAATCTTGGTGATGATCTCATCCAAGATCTTCAATTAACATGGAATAAACCTGATTGCAGAGTATGTGAATCACAAGGAAAATTGTGTCAATTTGAGAACAATACCAGTGATAGAATTCGTTGCTCCGATGATTACAATACAGGTGGTACATCAAAGGGACTTTTAGCCTTCAGAATAATCACATTATGCATAATTGGACCAGCTTGTATCTTTGCTGTTGTGTTAGCATGCTGTGTGTACTACAGAGATAGAGTTTCCAATGCTAATGCTGCAAGGAGAGCACTACAATTAGCAGCAATAACACCACATCCTCCTGAACCTCCCATTACCACAACTTTGGGATTGGATGAAACTACAATTGACTCTTATGAGAAGCTTGTGCTGGGTGAGAGTAAGAGGGTGCCAGGACCCAATAATGGAACATGTTGGATATGCTTGGCAGAGTACAACTCCAAAGAGACCATTAGATGCATCCCTGAATGCAAACATTGCTTCCATTCAGATTGCATTGATGAGTGGCTTAGAATGAATTCAACATGCCCAGTTTGCAGGAACACTCCAACTCCATCCCCTTCATGA 1113 0.4169 MGTLTKKILSLFFIYPVILASDCEFSWCESMLIRFPFQLQSNQLQHPYCGYPGFKLICTNDAKTVLDLPFSGEFYVRNINYLTQQIQVYDPDQCLPKRLLSLNLSGTPFIAMLSRNYTFLSCNSRNAASRSVPIDCLSNSTYFVSAVPSGDLANNSLPVSCKVIGRLSVPFSSTTFVRNLGDDLIQDLQLTWNKPDCRVCESQGKLCQFENNTSDRIRCSDDYNTGGTSKGLLAFRIITLCIIGPACIFAVVLACCVYYRDRVSNANAARRALQLAAITPHPPEPPITTTLGLDETTIDSYEKLVLGESKRVPGPNNGTCWICLAEYNSKETIRCIPECKHCFHSDCIDEWLRMNSTCPVCRNTPTPSPS* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0173 370 ProSiteProfiles Zinc finger RING-type profile. 320 362 IPR001841 -
Amo12g0173 370 PANTHER RING-H2 FINGER PROTEIN ATL21A-RELATED 8 368 - -
Amo12g0173 370 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 368 - -
Amo12g0173 370 SUPERFAMILY RING/U-box 319 365 - -
Amo12g0173 370 Pfam Wall-associated receptor kinase galacturonan-binding 23 90 IPR025287 GO:0030247
Amo12g0173 370 Pfam Wall-associated receptor kinase C-terminal 145 219 IPR032872 -
Amo12g0173 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 367 IPR013083 -
Amo12g0173 370 SMART ring_2 320 361 IPR001841 -
Amo12g0173 370 Pfam Ring finger domain 319 362 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0173 Amo-Chr12 2572761 2577115 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0173 29 367 C3H Transcription Factor Family AT2G25410 43.516 3.09e-86 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0173 - - adu:107463372 734.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0173 12 2572761 2577115 Amo12g0173 12 2572761 2577115 ECH