Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0171 ATGGAAAAGCTTCGAGTTTGCTTTGGAAAATCGGGTATCCATGGATGGGGTCTTTTTGCTCGTAGAGATATACAAGAAGGAGAGATGGTTGTTGAGTATCGTGGGGAGTGGGTAAGGCGTAGTGTTGCTGATTTAAGGGAAGTGAAATACCGTGCAGAAGGGAAAGATTGCTATCTGTTCAAGATCAGTGAGGATGTGGTAATTGATGCAACGTACAAGGGCAATATAGCACGGCTAATAAACCATTCTTGCATGCCAAATTGCTATGCAAGGATTATGAGTTTGGGTGATCAAGAGAGTCGGATCGTTCTCATTGCCAAGACGAAAGTTTCTGCTGGCGAAGAATTAACGTATGATTACTTATTCGATCCAGATGAGCAGGATGAACTGAAAGTTCCCTGCCTTTGCAAAGCCTCCAATTGTAGGAAATTTATGAACTAG 441 0.4263 MEKLRVCFGKSGIHGWGLFARRDIQEGEMVVEYRGEWVRRSVADLREVKYRAEGKDCYLFKISEDVVIDATYKGNIARLINHSCMPNCYARIMSLGDQESRIVLIAKTKVSAGEELTYDYLFDPDEQDELKVPCLCKASNCRKFMN* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0171 146 ProSiteProfiles Post-SET domain profile. 130 146 IPR003616 -
Amo12g0171 146 Gene3D SET domain 1 146 IPR046341 -
Amo12g0171 146 PANTHER PHD FINGER PROTEINS 2 146 - -
Amo12g0171 146 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 2 146 - -
Amo12g0171 146 SMART PostSET_3 130 146 IPR003616 -
Amo12g0171 146 CDD SET_SETD1-like 2 142 - -
Amo12g0171 146 SUPERFAMILY SET domain 3 143 IPR046341 -
Amo12g0171 146 SMART set_7 4 127 IPR001214 GO:0005515
Amo12g0171 146 Pfam SET domain 15 120 IPR001214 GO:0005515
Amo12g0171 146 ProSiteProfiles SET domain profile. 4 121 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0171 Amo-Chr12 2554429 2555594 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0171 15 146 C2H2 Transcription Factor Family AT2G23740 36.913 1.33e-19 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo12g0171 SET 1.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0171 - - gmx:100793624 273.863