Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0170 ATGATGGTCAAGCGGACAGTGAGAACCGAAATGCCAAACCTGAAAAGGTGCAAGCTGGAAGAAGGAGAGGAAGCAGAGCATGATTCTGAGAGCTATGGTTGTTCCGGGAATCAGAAGAAGCGGAAGGTTAACGAATTATGCTCTCGCGATGCTGAAGATTTCAGCAGTGGTTCTGGCTCTTGGTGCAGCGAAGGAGCGTATTGGAATGGTGGTGCTGAGGTTCAGTCCAATTCAAATTCCGTACAGCTGAACGGTAAAATGGCACCGCGTGACGGCGGCGGAGATGGGACTCGGCCGCCATTGTTGCGGTCTACACGGGGCCGCCATCAGTCCTTGCCGTCGAGGTTCAATGACTCGGTTCTTGATTCATGGAAGAACCAAGGAGTCAAAGTGGAGGACACGGATTCCAGCTTTGAGGATGATGCAGAAGAAGAGAAGAAAAAAAAGGGTGATAATTATTGTGGTCTTGAAGTGAATATAGGGATGGAAAAGAATGGTTTTGTTAAAACTGAGAGTAACAGTTCTGTGCTTAGTTTTGAGGGTGGTGTGGAGCAGAAGGTTAAAACTACTGGGAATGGTGGTGAAAGGAGGAAACAGGTTTACAGGCCGGAGGATTTCGCGTTGGGTGATATAGTTTGGGCGAAGTGTGGGAAGAGGTACCCTGCTTGGCCTGCTGTGGTGATTGATCCTATCTTGCAGGCTCCGAAATCCGTCCTCAGCTGCTGCGTTCCTGGTGCACTCTGCGTCATGTTCTTTGGCTTTTCGAAAAATGGGACCCAAAGGGACTATGCTTGGGTGAAGCAGGGAATGATATTCCCCTTCTCTAAGTTCATGGAAAGATTCCAGGGTCAGACACAGTTGTACAAGAGCAAACCGAGTGACTTTCGCATGGCATTGGAGGAGGCAATGCTGGCTGTAGATGGTCTTCTCAACTCACAGCTGGAAGTAGAGGAAGTAACTTATGTAAATGCTTATCCGAATGGACATTTAGAGGCCCCAGCCATGCCTGTTGATTATGAATACCACTGCGAGGATCAAGATACGATATCTTGTGCTGGCTGTTATTTGATGTTGCCATGCAAAACGATGAAGAAGATTAAGGACCCAAGTGGTGCATCTCAATTTTATTGCAAACATTGCTTTAAGTTACGAAAATCAAAACAATATTGTGGCATTTGCAAAAAGATTTGGCACCATTCACATGGTGGGAATTGGGTGTGCTGTGATCGCTGTAATGTTTGGGTGCATGCTGAGTGCGATAAAATATCCATTGAACTTTTCAAGGATCTTGAAAACACAGATTACTATTGCCCAGAGTGCAAGGGAAATTTCAATAAGAAATTACCCATACCCAAAACAAGCAAGTCAAAAAAGAAGTATAATGTGGAAGACAGATTGGTAGATAGTAGCCAAAAATCTATAGTACCTGAGACGGTAACAGTGGTGTGCAATGGCATGGAAGGACTCTACTTCCCAAAGCTTCATTTAATTATGTGCAAGTGTAGCTCTTGTGGTTCAAGGAAGCAGACACCAAGTGAATGGGAAAGGCACACAGGTAGCAGAGCTAAAAAATGGAAACATAGTGTGAAAGTGAAAAGCATGATGTTCCCACTAGAAAAATGGATCACAGAAAACATTTCACAAGATGGAGTTCCACAGCAGTTAGATCAGCAGCAGGTGCTTAGCTTTTTGCAAGAAAATTATGAGCCAGTTCATGCAAAATGGACAACAGAAAGATGTGCAGTTTGCAGATGGGTTGAAGATTGGGAAGATAATAAAATTATTATTTGTAACAGGTGCCAAATAGCAGTCCACCAAGAATGCTATGGGGCAAAGAATGTTCAAGATTTTACTTCTTGGGTTTGTAGAGTATGTGAAACACCAGATGTGGAGAGAGACTGTTGCCTCTGTCCTGTAAAAGGTGGTGCTCTAAAACCAACTGATGTTGAGATGCTATGGGTTCATGTGACATGTGCTTGGTTTCAACCTCAAGTGGTTTTCCAAAATCATGAGGCCATGGAACCTGCGGTAGGAATACTGAGAATTCCTCCTAATACCTTTGTTAAGACCTGTGTGATCTGTAAACAAAGCCATGGTTCCTGTACAAGTTGTTGCAAGTGTGCTACTTATTTTCATGTGATGTGTGCTTCGAGAGCAGGATATAGCACAGAATTGCATTCTGTGGAGAAGAATGGGACTCAAATAACAAAGAAGCTAATATACTGTGCAGTTCACAGGGTCCCAAATCCAGAATCTGTATTGGTTGTACATACTCCCCTGGGGTTTTCTCTCCCAGAGCCTCTCTTGAAAATCATAGAAGATGCTTCCGGGGGTCAAGGCTGGTTTCATCAAAGAATGTAG 2361 0.4413 MMVKRTVRTEMPNLKRCKLEEGEEAEHDSESYGCSGNQKKRKVNELCSRDAEDFSSGSGSWCSEGAYWNGGAEVQSNSNSVQLNGKMAPRDGGGDGTRPPLLRSTRGRHQSLPSRFNDSVLDSWKNQGVKVEDTDSSFEDDAEEEKKKKGDNYCGLEVNIGMEKNGFVKTESNSSVLSFEGGVEQKVKTTGNGGERRKQVYRPEDFALGDIVWAKCGKRYPAWPAVVIDPILQAPKSVLSCCVPGALCVMFFGFSKNGTQRDYAWVKQGMIFPFSKFMERFQGQTQLYKSKPSDFRMALEEAMLAVDGLLNSQLEVEEVTYVNAYPNGHLEAPAMPVDYEYHCEDQDTISCAGCYLMLPCKTMKKIKDPSGASQFYCKHCFKLRKSKQYCGICKKIWHHSHGGNWVCCDRCNVWVHAECDKISIELFKDLENTDYYCPECKGNFNKKLPIPKTSKSKKKYNVEDRLVDSSQKSIVPETVTVVCNGMEGLYFPKLHLIMCKCSSCGSRKQTPSEWERHTGSRAKKWKHSVKVKSMMFPLEKWITENISQDGVPQQLDQQQVLSFLQENYEPVHAKWTTERCAVCRWVEDWEDNKIIICNRCQIAVHQECYGAKNVQDFTSWVCRVCETPDVERDCCLCPVKGGALKPTDVEMLWVHVTCAWFQPQVVFQNHEAMEPAVGILRIPPNTFVKTCVICKQSHGSCTSCCKCATYFHVMCASRAGYSTELHSVEKNGTQITKKLIYCAVHRVPNPESVLVVHTPLGFSLPEPLLKIIEDASGGQGWFHQRM* 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0170 786 SMART PHD_3 389 441 IPR001965 -
Amo12g0170 786 SMART PHD_3 690 746 IPR001965 -
Amo12g0170 786 SMART PHD_3 579 626 IPR001965 -
Amo12g0170 786 SUPERFAMILY FYVE/PHD zinc finger 387 448 IPR011011 -
Amo12g0170 786 ProSitePatterns Zinc finger PHD-type signature. 580 625 IPR019786 -
Amo12g0170 786 Pfam PHD-finger 592 626 - -
Amo12g0170 786 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 381 447 IPR013083 -
Amo12g0170 786 PANTHER PHD FINGER PROTEINS 1 769 - -
Amo12g0170 786 CDD PHD_TCF19_like 390 440 - -
Amo12g0170 786 Pfam PHD-finger 389 441 IPR019787 -
Amo12g0170 786 ProSiteProfiles Extended PHD (ePHD) domain profile. 631 746 IPR034732 -
Amo12g0170 786 MobiDBLite consensus disorder prediction 127 146 - -
Amo12g0170 786 SMART PWWP_4 206 275 IPR000313 -
Amo12g0170 786 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 1 769 - -
Amo12g0170 786 SUPERFAMILY Tudor/PWWP/MBT 200 313 - -
Amo12g0170 786 Pfam PHD-zinc-finger like domain 633 745 - -
Amo12g0170 786 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 568 628 IPR013083 -
Amo12g0170 786 MobiDBLite consensus disorder prediction 18 37 - -
Amo12g0170 786 MobiDBLite consensus disorder prediction 128 146 - -
Amo12g0170 786 ProSiteProfiles PWWP domain profile. 208 277 IPR000313 -
Amo12g0170 786 MobiDBLite consensus disorder prediction 82 119 - -
Amo12g0170 786 ProSiteProfiles Zinc finger PHD-type profile. 387 443 IPR019787 -
Amo12g0170 786 ProSiteProfiles Zinc finger PHD-type profile. 577 628 IPR019787 -
Amo12g0170 786 MobiDBLite consensus disorder prediction 18 35 - -
Amo12g0170 786 SUPERFAMILY FYVE/PHD zinc finger 577 642 IPR011011 -
Amo12g0170 786 Gene3D - 172 315 - -
Amo12g0170 786 CDD PHD_ATX3_4_5_like 579 625 IPR042011 -
Amo12g0170 786 Pfam PWWP domain 209 305 IPR000313 -
Amo12g0170 786 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 629 747 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0170 Amo-Chr12 2549149 2553765 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0170 580 732 C2H2 Transcription Factor Family AT3G14740 33.750 2.16e-19 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo12g0170 zf-HC5HC2H_2 1.9e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0170 - - gmx:100793624 1128.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0170 12 2549149 2553765 Amo12g0170 12 2549149 2553765 ECH