Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0160 ATGGAATCTGGTGATAGTAATAGTACTGTATCATCATTGATCATGATGGATGATGAAGATGTGCATCATCCACATCACAATCATCATCATCATCAGTATTCTTCTTCAATCAACAAGGTTCATCATAGCAGTGGTGGTGGTTCCACAGCTACAAGTGTTCATGAGCTTCTTGAGTGTCCTGTTTGCACAAATTCAATGTACCCTCCAATCCATCAGTGCCACAATGGACATACCCTTTGTTCAACTTGTAAGACAAGGGTACATAACCGGTGTCCTACTTGTAGACAAGAACTCGGTGACATAAGGTGTTTGGCGTTGGAGAAGATTGCGGAATCACTAGAATTGCCTTGCAGATATAGCTCTCTTGGCTGTCCAGAGATATTTCCATATTACAGCAAACTCAAACATGAGTCTCTTTGTAACTTCAGACCTTACAACTGCCCCTACGCCGGATCGGATTGCTCTATTGTCGGGGATATTCCGTACCTTGTTGCTCATTTAAGGGATGATCATAGGGTTGATATGCATTCTGGATGCACTTTTAACCATCGTTATGTCAAGTCTAATCCGATGGAAGTCGAAAACGCCACGTGGATGCTGACTGTCTTCCACTGTTTTGGTCAGTACTTCTGTCTCCATTTCGAAGCCTTCCAGCTCGGTACAGCTCCTGTTTACATGGCATTCCTGCGTTTCATGGGCGACGAAAGAGATGCACGGAGCTATAGCTACAGCTTGGAAGTAGGAGGAAATGGGCGGAAACTAACCTTCGAGGGAAGTCCTAGAAGCATAAGAGATAGCCACAAGAAAGTTAGAGATAGCCATGACGGCCTCATTGTATACCGAAACATGGCGCTTTTCTTCTCCGGTGGGGACCGGAAAGAGCTGAAGCTGAGAGTAACTGGAAGGATATGGAAAGAACAGCAAAACCCGGAAAGTGGAGTGTGCTTACCAAATCTGTGCAGCTAG 966 0.4493 MESGDSNSTVSSLIMMDDEDVHHPHHNHHHHQYSSSINKVHHSSGGGSTATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYSSLGCPEIFPYYSKLKHESLCNFRPYNCPYAGSDCSIVGDIPYLVAHLRDDHRVDMHSGCTFNHRYVKSNPMEVENATWMLTVFHCFGQYFCLHFEAFQLGTAPVYMAFLRFMGDERDARSYSYSLEVGGNGRKLTFEGSPRSIRDSHKKVRDSHDGLIVYRNMALFFSGGDRKELKLRVTGRIWKEQQNPESGVCLPNLCS* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0160 321 SUPERFAMILY RING/U-box 44 98 - -
Amo12g0160 321 CDD Sina 173 301 - -
Amo12g0160 321 CDD RING-HC_SIAHs 57 95 - -
Amo12g0160 321 ProSiteProfiles Zinc finger SIAH-type profile. 112 172 IPR013010 GO:0008270
Amo12g0160 321 ProSiteProfiles Zinc finger RING-type profile. 59 95 IPR001841 -
Amo12g0160 321 Pfam Seven in absentia protein family 101 300 IPR018121 GO:0005737|GO:0006511|GO:0007275
Amo12g0160 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 111 IPR013083 -
Amo12g0160 321 PANTHER UBIQUITIN LIGASE SINAT3 5 313 - -
Amo12g0160 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 167 IPR013083 -
Amo12g0160 321 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 5 313 - -
Amo12g0160 321 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 174 300 IPR008974 GO:0005515
Amo12g0160 321 MobiDBLite consensus disorder prediction 21 49 - -
Amo12g0160 321 SUPERFAMILY TRAF domain-like 112 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0160 Amo-Chr12 2431087 2435627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0160 34 307 C3H Transcription Factor Family AT2G41980 75.912 8.32e-160 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0160 K04506 - gmx:100782764 592.808