Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo12g0152 | ATGGAATCTGGTGATAGTAATAGTACTGTATCATCATTGATCATGATGGATGATGAAGATGTGCATCATCCACATCACAATCATCATCATCATCAGTATTCTTCTTCAATCAACAAGGTTCATCATAGCAGTGGTGGTGGTTCCACAGCTACAAGTGTTCATGAGCTTCTTGAGTGTCCTGTTTGCACAAATTCAATGTACCCTCCAATCCATCAGTGCCACAATGGACATACCCTTTGTTCAACTTGTAAGACAAGGGTACATAACCGGTGTCCTACTTGTAGACAAGAACTCGGTGACATAAGGTGTTTGGCGTTGGAGAAGATTGCGGAATCACTAGAATTGCCTTGCAGATATAGCTCTCTTGGCTGTCCAGAGATATTTCCATATTACAGCAAACTCAAACATGAGTCTCTTTGTAACTTCAGACCTTACAACTGCCCCTACGCCGGATCGGATTGCTCTATTGTCGGGGATATTCCGTACCTTGTTGCTCATTTAAGGGATGATCATAGGGTTGATATGCATTCTGGATGCACTTTTAACCATCGTTATGTCAAGTCTAATCCGATGGAAGTCGAAAACGCCACGTGGATGCTGACTGTAAGCATATAA | 615 | 0.4228 | MESGDSNSTVSSLIMMDDEDVHHPHHNHHHHQYSSSINKVHHSSGGGSTATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYSSLGCPEIFPYYSKLKHESLCNFRPYNCPYAGSDCSIVGDIPYLVAHLRDDHRVDMHSGCTFNHRYVKSNPMEVENATWMLTVSI* | 205 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo12g0152 | 204 | Pfam | Seven in absentia protein family | 101 | 202 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Amo12g0152 | 204 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 5 | 202 | - | - | |
Amo12g0152 | 204 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 13 | 111 | IPR013083 | - | |
Amo12g0152 | 204 | SUPERFAMILY | RING/U-box | 44 | 99 | - | - | |
Amo12g0152 | 204 | CDD | RING-HC_SIAHs | 57 | 95 | - | - | |
Amo12g0152 | 204 | ProSiteProfiles | Zinc finger RING-type profile. | 59 | 95 | IPR001841 | - | |
Amo12g0152 | 204 | ProSiteProfiles | Zinc finger SIAH-type profile. | 112 | 172 | IPR013010 | GO:0008270 | |
Amo12g0152 | 204 | MobiDBLite | consensus disorder prediction | 21 | 49 | - | - | |
Amo12g0152 | 204 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 112 | 167 | IPR013083 | - | |
Amo12g0152 | 204 | SUPERFAMILY | TRAF domain-like | 112 | 202 | - | - | |
Amo12g0152 | 204 | PANTHER | UBIQUITIN LIGASE SINAT3 | 5 | 202 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo12g0152 | Amo-Chr12 | 2315334 | 2319171 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo12g0152 | 34 | 202 | C3H Transcription Factor Family | AT2G41980 | 75.740 | 4.37e-93 | 272 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo12g0152 | K04506 | - | gmx:100782764 | 352.443 |