Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0152 ATGGAATCTGGTGATAGTAATAGTACTGTATCATCATTGATCATGATGGATGATGAAGATGTGCATCATCCACATCACAATCATCATCATCATCAGTATTCTTCTTCAATCAACAAGGTTCATCATAGCAGTGGTGGTGGTTCCACAGCTACAAGTGTTCATGAGCTTCTTGAGTGTCCTGTTTGCACAAATTCAATGTACCCTCCAATCCATCAGTGCCACAATGGACATACCCTTTGTTCAACTTGTAAGACAAGGGTACATAACCGGTGTCCTACTTGTAGACAAGAACTCGGTGACATAAGGTGTTTGGCGTTGGAGAAGATTGCGGAATCACTAGAATTGCCTTGCAGATATAGCTCTCTTGGCTGTCCAGAGATATTTCCATATTACAGCAAACTCAAACATGAGTCTCTTTGTAACTTCAGACCTTACAACTGCCCCTACGCCGGATCGGATTGCTCTATTGTCGGGGATATTCCGTACCTTGTTGCTCATTTAAGGGATGATCATAGGGTTGATATGCATTCTGGATGCACTTTTAACCATCGTTATGTCAAGTCTAATCCGATGGAAGTCGAAAACGCCACGTGGATGCTGACTGTAAGCATATAA 615 0.4228 MESGDSNSTVSSLIMMDDEDVHHPHHNHHHHQYSSSINKVHHSSGGGSTATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYSSLGCPEIFPYYSKLKHESLCNFRPYNCPYAGSDCSIVGDIPYLVAHLRDDHRVDMHSGCTFNHRYVKSNPMEVENATWMLTVSI* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0152 204 Pfam Seven in absentia protein family 101 202 IPR018121 GO:0005737|GO:0006511|GO:0007275
Amo12g0152 204 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 5 202 - -
Amo12g0152 204 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 111 IPR013083 -
Amo12g0152 204 SUPERFAMILY RING/U-box 44 99 - -
Amo12g0152 204 CDD RING-HC_SIAHs 57 95 - -
Amo12g0152 204 ProSiteProfiles Zinc finger RING-type profile. 59 95 IPR001841 -
Amo12g0152 204 ProSiteProfiles Zinc finger SIAH-type profile. 112 172 IPR013010 GO:0008270
Amo12g0152 204 MobiDBLite consensus disorder prediction 21 49 - -
Amo12g0152 204 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 167 IPR013083 -
Amo12g0152 204 SUPERFAMILY TRAF domain-like 112 202 - -
Amo12g0152 204 PANTHER UBIQUITIN LIGASE SINAT3 5 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0152 Amo-Chr12 2315334 2319171 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0152 34 202 C3H Transcription Factor Family AT2G41980 75.740 4.37e-93 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0152 K04506 - gmx:100782764 352.443