Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0150 ATGGTGATGAAAATTCTCGGAAAACGTGCTTTTGATTACTTGGCTTCAAACTCCTTCATCACCAATGAGAGCATGTTAATGGCAACAGGGAGTTTCGAGAATCTTCAGAACAAGCTCTCTGATCTTGTTGAACGCCCCAACTTYAACKATTTCAGTTGGAACTACGCGATCTTRTGGCAGTTTTCACAGTCCAAATTCAAAAAAGATTGTGTTGTTCTTGGTTGGGGTGATGGCTGTTGCAGAGAACCAATCGAAGGTGAAGAAGAAAGAGAAGCTTTGAGACTTGGATTTGATYATGATGAYGTTGTTCAGAGAATGAGGAAGAGGGTGRTGCAGAAGCTTCACACGYTTTTTAATGGTTCTGAAGAGGAAAATGAAAATTACGCTTTTGGCCTTGACCGTGTAACTGACACTGAGATGTTCTTCCTTGCTTCCATGTACTTCTCTTTRCCCAAAGGTTATGGTGGTCCAGGTAAGTGCTTTGAACTTGCTGGGATTAAAACTGTTGTTTTGGTTCCAACTGAATTAGGTGTTGTTGAARTAGGTTCTGTGAGGATTGTTGATGAGAACCTTGATTTGTTAAAAGCTGTGTACTCTGTATTTTCTTCTTCTTTTGCTCACTCATCATCATTCAATGATGTTGTAAATGTCAAGGGAGATGAAAAAAATAGATTTTTTTGTGGTTTGAATGTTGGGGATTGGGATAGGGATAGAGATATTAGGGTTAGGGATCTTGAGGGTGTTCCGGTTCCAAAGATTTTTGGGAAYGAATTGAATGTTGGGAATTTGAATTCAGGGGGAAAGAATTTTAGGGAGAAAGTTGTTGTTAGGAAAATTGAAGAGAAGAAATCATGGAATGGTTACCCTAATGGGAATAATGGAATTCGGTTTCRTAATAATGCTAGGYATGGTGTTAATGAYAAACCYAGCYCGACTCAAGAAAAYAGGCCGAAAAAGCGAGGTAGGAAGCCTGCRAATGGAAGGGAAGAGCCCCTCAATCATGTGGAGGCGGAGAGGCAAAGGCGCGAGAAACTAAACCAACGTTTCTATGCGTTGCGCGCTGTTGTACCTAATATCTCGAAGATGGATAAGGCYTCTTTGTTGGGAGACGCCATAGRTCACATCAATGAGCTACAGGCGAAATTAAAGGCCTTGGAATACGAAAAATCAACCCTGYAAAGTACTTCCAAGGCTAYTTTARCAGGAATTGAGGCCAATCTTCGAGATAGAACTTGTTCTTTCAAGGTGGATATKGAAGCGGATCAAGATGGTGTGATTGTGAAAGTGAGTTGRCCTATTGASCTTCATCCTACATCAAAATTGATCCAAGCGTTAAAAGASTCAGAAATGAGTATTTTGGAGTCCAKATTTAATGCTACAAATGATCATGTRTTCCACACATTCGTGATTAAGTCCCATGCATCGGAACAACTCACAAAAGAYAAGGTGATCGCGGCGATRTCTGGTGAATCCAACTCAAGAAAACTCATATTCGCATAG 1500 0.398 MVMKILGKRAFDYLASNSFITNESMLMATGSFENLQNKLSDLVERPNFNXFSWNYAILWQFSQSKFKKDCVVLGWGDGCCREPIEGEEEREALRLGFDXDDVVQRMRKRVXQKLHTXFNGSEEENENYAFGLDRVTDTEMFFLASMYFSLPKGYGGPGKCFELAGIKTVVLVPTELGVVEXGSVRIVDENLDLLKAVYSVFSSSFAHSSSFNDVVNVKGDEKNRFFCGLNVGDWDRDRDIRVRDLEGVPVPKIFGNELNVGNLNSGGKNFREKVVVRKIEEKKSWNGYPNGNNGIRFXNNARXGVNDKPSXTQENRPKKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIXHINELQAKLKALEYEKSTLXSTSKAXLXGIEANLRDRTCSFKVDXEADQDGVIVKVSXPIXLHPTSKLIQALKXSEMSILESXFNATNDHVFHTFVIKSHASEQLTKDKVIAAXSGESNSRKLIFA* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0150 499 CDD bHLH_AtAIB_like 326 389 - -
Amo12g0150 499 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 332 394 IPR036638 GO:0046983
Amo12g0150 499 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 164 300 - -
Amo12g0150 499 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 329 378 IPR011598 GO:0046983
Amo12g0150 499 PANTHER MYC 164 300 IPR045084 GO:0003700|GO:0006355
Amo12g0150 499 PANTHER MYC 1 161 IPR045084 GO:0003700|GO:0006355
Amo12g0150 499 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 163 201 IPR025610 -
Amo12g0150 499 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 35 161 IPR025610 -
Amo12g0150 499 Coils Coil 374 392 - -
Amo12g0150 499 Coils Coil 368 372 - -
Amo12g0150 499 SMART finulus 335 384 IPR011598 GO:0046983
Amo12g0150 499 MobiDBLite consensus disorder prediction 287 311 - -
Amo12g0150 499 Coils Coil 394 395 - -
Amo12g0150 499 Pfam Helix-loop-helix DNA-binding domain 333 379 IPR011598 GO:0046983
Amo12g0150 499 MobiDBLite consensus disorder prediction 287 340 - -
Amo12g0150 499 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 307 492 - -
Amo12g0150 499 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 1 161 - -
Amo12g0150 499 MobiDBLite consensus disorder prediction 312 340 - -
Amo12g0150 499 Gene3D - 322 394 IPR036638 GO:0046983
Amo12g0150 499 PANTHER MYC 307 492 IPR045084 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0150 Amo-Chr12 2274213 2276084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0150 1 495 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46510 38.737 1.24e-115 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo12g0150 bHLH-MYC_N 6e-22 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0150 - - ccaj:109808433 430.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0150 12 2274213 2276084 Amo12g0150 12 2274213 2276084 ECH