Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0148 ATGGCTGATGGGGCTGGTGATGATTTGTTTAAAGAGCTATGGAGGTTGTGTGCAGGGCCATTAATGGATGTTCCTTGTGTTCAAGACAGAGTTTTCTATTTCCCTCAGGGTCACATTGAATTGTTGCCAGAACCTACAGAACAAGAATTGAGGCAGATGAAGAACCAGAAATCTCCCAAATACGATCTTCCGTCGAAGATCTTATGCCGTGTTATCGATGTTAAGTGTCTGGCCGAGATGGAAACCGACGAGGTTTATGCTCGAATCACTTTGCAGCCATCTTCAGATAATGATCCTCTAGATCCTAATCCAATTTGTTCCGAGAAACCGAAACAGAAATTTTACTCATTTTGTAAGACACTGAGTACCTCAGATACTAGCACACATGGAGGATTTTCGGTTCTTCGGAAGCATGCTAATGAATGCTTGCCTCAATTGGATATGACAATGGAAAATCCTACTCAGGAGTTGGTAGCAAAGGATATTCATGGGGTTGAATGGAAGTTTAAGCATATATATAGAGGACATCCGAAGAGGCACCTGCTTACAACTGGCTGGAGTGCATTCGTTGCGGCCAAGAAATTGGTTGCCGGAGATTCTTTTGTTTTTCTAAGGGGAGAGAATGGACAACTGAGGGTAGGCGTTAGACGTTTGAATCCGCCGCAGAGTCCTACGCCTTCGTCCGTGGTGTCGACACAAAACATGCGCCTTGGAGTGATTGTTACTGCAAGCCATTCTGTTATGACTAGTACCATGTTTGTGGTTTATTACAAGCCAAGGACTAGCCAGTTTATTGTTAGTTTAAACAAATATATTGACACGATGAACAATGACTTCAAAATCGGCATGCGATTCAAGATGAGACATGAGGGTGAAGATCCACTTGACAAAAGGTTTTGTGGTACTATAGTTGGAGTTGGAGATGAATCTCGAGAATGGCCGAATTCTCAATGGAGGTCATTGAAGGTTCAATGGGATGAACCAGCAACAATGCAAAGACCAGATAGAGTTTCATGTTGGGAGATTGAACCTCTTGTTACTTCGCCTTTGAATARGATTCAACCGATGGCGAAGGGAAAAAGATCAAGGCATGCTGAGGCTTCATCTTCTGCTGCTTCAGGTAGCAAAGAAAGCCAAGTAGCTACAATATGGCAGCCACCACATTTGAATGGCAATGGAAATTCTTCTCAAGATCCCGAAAACAACAAAGCCGTCGTCCCGGTTGGTCCAGCTGGCGAAGGCCCGGCACGCGACCACAACGAAGACAGGAAGAAGGGCATGGATTGCTGGTTGTTTGGGGTGAATTTGACTAGCAGCTATAGTAATGTTGTTACCCCTTTGGAGAAAGAACTTTGGTGTGAAGCTTCAACTATCCTTCATTGTGGTCCCAAAGAATCTATTATTGTTGGTGCATGTGAGACTGAGAAGGTTCAGAGTCTCAATAACCATTCACTGTCCAACAAGCAGGGCCATGTACCATCCATGAGGACTAGGACTAAGGTGAAAATGGAAGGTGTAGCAGTTGGTCGAGCAATTGACTTGACCACATTAAATGGTTATGATGAACTCATAGTTGAGCTTGAGAAAATGTTTGACATTGAAGGAGAAATTATATCTCAGAAGAAATGGGCTGTTACTTTCACTGATGAAGAAAATGACCTTATGCTTCTTGGTGATGATTTATGGCAGGACTTCTGCAAAATGGTGAAGAGGATTTTCATTTGTTCAAAGGAGGATTAA 1740 0.431 MADGAGDDLFKELWRLCAGPLMDVPCVQDRVFYFPQGHIELLPEPTEQELRQMKNQKSPKYDLPSKILCRVIDVKCLAEMETDEVYARITLQPSSDNDPLDPNPICSEKPKQKFYSFCKTLSTSDTSTHGGFSVLRKHANECLPQLDMTMENPTQELVAKDIHGVEWKFKHIYRGHPKRHLLTTGWSAFVAAKKLVAGDSFVFLRGENGQLRVGVRRLNPPQSPTPSSVVSTQNMRLGVIVTASHSVMTSTMFVVYYKPRTSQFIVSLNKYIDTMNNDFKIGMRFKMRHEGEDPLDKRFCGTIVGVGDESREWPNSQWRSLKVQWDEPATMQRPDRVSCWEIEPLVTSPLNXIQPMAKGKRSRHAEASSSAASGSKESQVATIWQPPHLNGNGNSSQDPENNKAVVPVGPAGEGPARDHNEDRKKGMDCWLFGVNLTSSYSNVVTPLEKELWCEASTILHCGPKESIIVGACETEKVQSLNNHSLSNKQGHVPSMRTRTKVKMEGVAVGRAIDLTTLNGYDELIVELEKMFDIEGEIISQKKWAVTFTDEENDLMLLGDDLWQDFCKMVKRIFICSKED* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0148 579 Gene3D - 278 349 - -
Amo12g0148 579 SUPERFAMILY CAD & PB1 domains 490 572 - -
Amo12g0148 579 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 4 387 IPR044835 GO:0003677|GO:0006355|GO:0009725
Amo12g0148 579 Gene3D - 492 579 - -
Amo12g0148 579 PANTHER AUXIN RESPONSE FACTOR 11 421 579 - -
Amo12g0148 579 CDD B3_DNA 116 217 IPR003340 GO:0003677
Amo12g0148 579 Gene3D - 115 218 IPR015300 -
Amo12g0148 579 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 421 579 IPR044835 GO:0003677|GO:0006355|GO:0009725
Amo12g0148 579 Pfam B3 DNA binding domain 117 217 IPR003340 GO:0003677
Amo12g0148 579 MobiDBLite consensus disorder prediction 366 402 - -
Amo12g0148 579 Pfam AUX/IAA family 488 532 IPR033389 -
Amo12g0148 579 MobiDBLite consensus disorder prediction 352 423 - -
Amo12g0148 579 PANTHER AUXIN RESPONSE FACTOR 11 4 387 - -
Amo12g0148 579 SUPERFAMILY DNA-binding pseudobarrel domain 105 244 IPR015300 -
Amo12g0148 579 SMART B3_2 117 219 IPR003340 GO:0003677
Amo12g0148 579 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
Amo12g0148 579 Pfam Auxin response factor 243 322 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Amo12g0148 579 ProSiteProfiles PB1 domain profile. 496 577 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0148 Amo-Chr12 2184966 2189699 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0148 7 574 B3 DNA Binding Superfamily AT2G46530 51.546 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Amo12g0148 B3 8.2e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0148 K14486 - gmx:100795763 718.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0148 12 2184966 2189699 Amo12g0148 12 2184966 2189699 ECH