Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0143 ATGGGAAGAGCTCCTTGTTGTTCAAAAGTAGGGTTGCATAGAGGTCCATGGACTCCAAGAGAAGACACACTCCTCACTAAGTATATTCAAGCTCATGGAGAAGGACAATGGAAATCACTACCAAAAAAAGCTGGACTTTTGAGATGTGGGAAAAGTTGTAGACTAAGATGGATGAATTATTTGAGACCAGATATAAAGCGTGGAAACATAACTCCTGAAGAAGATGATCTTATAATAAGAATGCATTCTCTCTTGGGAAACAAATGGTCCCTCATAGCTGGAAGATTGCCGGGAAGAACTGACAACGAGATCAAGAATTATTGGAACACGCATCTAAGCAAGAAGATGAATGATTCGAAAGAGAAAGAGGAAAAAGAAGGAGGAGAAACCGTCGCTAAAAAGAAGAATAGCGACGGTAATAAAAGGAAGAACAAGAACAATAGTAAGAGAGAGAAGAATAAGAAGAAAAACAAAGGATCAAAAGAAGAATCACCAAAAACACAAGTTTATTTACCAAAACCTATTAGGGTGAAGCCATCAAATTTGGGTAGAACAAATAGTTCTTCCTTTACTTCTTTTGATTCGAACAATTCGGCAACAACGAGTCAGAAAGAAGAAGATAACAATAACAATAACAATGGCGAGGGCGAGGGCGACGTCACGAAAGTATGGACGGAGGAAACAAACAACTTGGTGTTTTTGGGTGAGGTTGGTGTGAACAAGAAAAATAATAATGTGGATGAAAATGATGGGTTTGGATTCTATTTTGATGGCCATGAAGACTTAGTCCTCAATAATAATAATTCAGATATGGAGGGTCAATCCTATAATTATTATGGAATGGAGGATCATCTTAATAATAATCATGGAACATTAGAGAAGCTATATGAAGAGTATTTGCAGGTTTTGAATATGGAAGATAACATGTATGAGTTGGATTCTTTTGCTGAGTCTCTAATGGTGTAA 966 0.3706 MGRAPCCSKVGLHRGPWTPREDTLLTKYIQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIIRMHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHLSKKMNDSKEKEEKEGGETVAKKKNSDGNKRKNKNNSKREKNKKKNKGSKEESPKTQVYLPKPIRVKPSNLGRTNSSSFTSFDSNNSATTSQKEEDNNNNNNGEGEGDVTKVWTEETNNLVFLGEVGVNKKNNNVDENDGFGFYFDGHEDLVLNNNNSDMEGQSYNYYGMEDHLNNNHGTLEKLYEEYLQVLNMEDNMYELDSFAESLMV* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0143 321 MobiDBLite consensus disorder prediction 115 145 - -
Amo12g0143 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Amo12g0143 321 MobiDBLite consensus disorder prediction 115 219 - -
Amo12g0143 321 CDD SANT 16 61 IPR001005 -
Amo12g0143 321 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 307 - -
Amo12g0143 321 PANTHER MYB TRANSCRIPTION FACTOR 1 307 - -
Amo12g0143 321 SMART sant 66 114 IPR001005 -
Amo12g0143 321 SMART sant 13 63 IPR001005 -
Amo12g0143 321 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Amo12g0143 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Amo12g0143 321 Gene3D - 71 116 - -
Amo12g0143 321 MobiDBLite consensus disorder prediction 180 219 - -
Amo12g0143 321 CDD SANT 71 112 IPR001005 -
Amo12g0143 321 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo12g0143 321 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo12g0143 321 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Amo12g0143 321 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Amo12g0143 321 Gene3D - 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0143 Amo-Chr12 2117299 2118825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0143 1 116 MYB Transcription Factor Family AT5G49330 75.000 2.27e-64 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo12g0143 Myb_DNA-binding 1.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0143 K09422 - gmx:100101857 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0143 12 2117299 2118825 Amo12g0143 12 2117299 2118825 ECH