Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0109 ATGACATCTTGGGAGGAGTGGCACTTACCTGACTCAGAAGCCTTTCCTCAGCTTAAGAGCCTTCAAATAAGACATTGTCCAATGTTAAAGGGAGATATGGTTAATCAGGTATTCATGAGAATCGTTTCTTCCTCATCGGATGTTTCCAAAGTGCGCCAACTGAAAATACGAGATCATCGTCCACGATGGGCTAAAGAGATGAGACTTGATGGGGATAGGTTATCAATTAGTGGATTTAAATGTGTGGTGGAGTATGCATTTAAGGCAAAGATCATCCACCATCTAACTTCCCTCCAAGAAATACAAATCTCAGGGATAGGAGAATGCAAGGAACAACTGAGAGGTCTATCATGGATGGGCAACTTGGACAACCTCACTCATCTCACCATCTCAAATTGTGATGGCGGGGAGAGCAGCATAAAGTCATACCCAGAGGTGGGTTGGCTGCCTCGCCTTCCCTCCCTTACCACTCTGTATCTCTTCAACTTTAAGAATCTGGAGACATTGGAGTGCAACGAGCTTCTCCGCCTCACCTCCCTCCAACAACTACTCATTTCAAACTGTCCAAAGCTGAAGAATATGGAAGGAGAAAAGCTGCCTTCCTCCCTCCAACAATTACACATTTCATGGTGTGAGACTCTGGAGAATATTGCAGGAGAAAAGCTGCCTCCCTCTCTCTTACTACTTCAACTTGACGGCTGTGGTTTGCTGGGCGAACACTGCAAGAACAAGCATCAACAAGTTTGGTCCAAAATTTCCCACATCCCCACCATTATACTATTTCTAATACTAAGAAAAGCTTTAGTTTCTGGCTTGGCCAACGTTGTTCTTGACAGGCTCATTTCATCTGAGTTTGTCAACTTGGTGGTGGGCAAGAAGCTGGATCGGAAGTTGGTTGAGAAGCTGAAGACTGCTATCTTGGCTGCCAAAGCTCTGGCTGCTGATGCTGAGCAGAAGAAGTTTGGAAACGAACTCGTGAGGGAGTGGCTTGATAGTCTCAAAGATGCTCTCTACACTGCTGATGACTTGCTGGACCGTATGGTGACTAAGATAGAAGAGGTGGTTGAAAGAATAGAAGATCTTGAGAGACGCAAAGATACCCTTGGTCTGAGAGAGATTCAAATAGGAAGCTCTTCATGGAGACCTCCATCCACTTCTCTTGTGAAGGGGAATGTGTTCGGCAGGGATGCTGATCAACAGGCACTAATCAAGATGCTCAATGACAACAATCATCATAACTTGTCCGTCATCTCTATTGTTGGTATGGGCGGGGTTGGTAAAACTACTTTAGCGCAATGGCTCTACAACAATAAGGATTTGATGGACGGGGTTGATCTGAAAGCATGGATTTGTGTTTCTGAAAATTTTGATGTTGTTGAGACTACTAAGAATGTTATAAAGGGGATCTCTTCAGGTGTTTGTAGTCTTGACGGCTTTGATTTACTTCAACAACATTTGAAGGAAAAACTGTCAGAAAAGAAGTTCTTCATTTGGAATAGTTTTATCACCCCTTTTCAACATGGGAGAAAGGGAAGCACTATTCTTCTAACTACCCGCATGGTAAATGTTGGTCAAATAGTCCAACACTATAACTCTTACACCCTCAATCAACTGTCAGATGATTATTGTTGGTCTATTTTTGCGGACAATGCATCCTTTCCTAAATCAAATGGGAGCTCAGAACTGGAAGGAATAGGTAGAAAGATTGTCGAGAGGTGTGATGGCTTGCCGTTAGCTGCAGAAACACTTGGACGCTTGTTGCGCTCAGAGCGTCGTGCTGAAGAATGGAATAAAATACTATCGAGTGACATTTGGGAATTTCGTCTGGCAAATTGTAAGATTGTTCCTGCATTGTTATTAAGTTACCAACATCTGCCTATTCATTTGAAACGATGCTTTGTTTATTGTTCATTGTATCCCAAAGATCATAAACTTGATAAAGATGAATTAATATTGCTGTGGATGGCGGAAAACCTTTTACAACCACCAAGGAGGGAACAGACTTTAGAAGAAGTTGGCTGCGAGTGTTTCGATGACTTGGTTTCAAGACTATTCTTCAAGCAGGTCGAGAATGAGGATGAGAAGTATTTTGTGATGCACGATCTCATGCATGACTTGGCAATTTTTCTTGCTGGAAAATTTTGTTGTAGACTATCTGAAGAACTTGGTGAAGTGGAAGAAATGAGTATTCTAACTCGTCATTTGTCATACGGTGATTCAAATCCTGCGAAAACATGCTCCTCTAATAAAATAGAATCTTTGAGGACAATACTGTATACCAATCGTGGAGCTGCTTTCTGGAAAGCACACGCAACATTACCATGTGACATATTGTCAAAGAATAAATACCTGAGAGTTGTATCCTTTGATATACGCCCTATATATCTTGATTCAATAGCTAAATTGATCCAACTGCGCTATTTGGATCTTTCTTGGAGTGATATTGAGGTATTGCCGCCGTCATTATGCAACTTGTGCAATCTACAAACTTTAAAGTTAGAAGGTTGTTCAAAGCTGACTATGCTGCCCAATGGCATGTCTAATCTTGTGAATTTGCGGCATCTTAATATAACGGATACTCCTCTGAAAGAAATGCCTAAAGGAATGGGCAAATTAAAACAGTTGCACGTTCTAAGCAAGTTTGTGGTGGGAAAGCAAGAAGACAAAAGAATCCAAGAGTTAGGAGGGCTTTTAAATCTTCATGGACCACTTGAGATTCAAAAATTGGAGAATGTGGTTGATGCCAATGAGGCAAGGAGTTCAAGGATAATAGATAAGAAGCACATTGAGTACTTATTGTTGAAATGGTCTTCAGGTGATGATATGGTTTCCAACACACATACTGATGAACAAGATATACTCCAGGGCTTGCAACCACACACTGGCTTGAAGGAGTTGGAAATCAAGGGATACAAGGGTACAACATTTTCCGACTGGTTGGGGCGCTGTTCCTACAAAAATATGACACGTGTAACTCTGAAGTCTTGCAAGAATTGCTGCATGCTGCCTTCACTTGGACAGCTGCCATCTCTAAAGTTCCTCCGCATTGAAAAGTTTGATCAGCTGAAGAGCATTGGCAAGGAGTTTTACAAGAATGAAGGCCATCAACATTCTTCGCCTATTGCACCGTTTTCCTCACTGGAGGAATTGATATTTCATAATATGCCAAGTTGGGAGGAGTGGCAGTTACCTGACTCAGAAGCCTTTCCTCAGCTTAAGATCCTTCAAATAAGAGGGTGTCCAATGTTAAAGGGAGATATGGTTAATCAGGTATTCATGAGAATCGTTTCTTCCTCATCGGATGTTTCCAAAGTGCGCCGACTGAAAATACAAGAAGATAATGGAGGATGGGGTAAAGAGATGAGACTTGATGGGGATAGTTTAACAATTAGTGGATTTGAATCTGTGGCGGAGTATGCATTTAAGGCAAGGATCATCCACCATCTAACTTCCCTCCAAGAAATACACATATCATGGTGTTCATCTGTTGTATCCATGGGGGGCAATTGTTTACCCAAATCTTTGCAAAAGCTCAAAATCGTTTTTTGCGGCGAAATTGAATTACTCCAGCAACAACACAAATATGATTTGCCACCACACGCTGCTCTTCAACGTCTCTCCATCACTCGATGCTCCAAATTTGTGTCATTGCCATCTGATATGAATAGTCTTCTCCCAAATTTAGAGTCTCTGGACATACGAGGTTGCCCAAACATTTGCAGGTTGCCAGAGGGAGGTTTGCCGGCTAACCTGAAAGAGCTTAGCGTAGGAGATTGCGAGCAACAAGTGAGGAGTCTATCATGGTTGGGCAACTTAGACAACCTCACTCATCTCACCATCTCAGGTCATGGCAGTGAGAGCAGAATAAAGTCATACCCAGAGGTGGGTTGGCTGCCTCGACTTCCCTCCCTTACCACTCTACATATCCGAGCGTTTTATAATCTGGAGACATTGGAGTGCAACGAGCTTCTCCGCCTCACCTCCCTCCAACAACTACACATTGAGTTCTTTATGAACCTGAAGAATATTGCAGGAGAAAAGCTGCCACCCTCTCTCTTACTACTCAAAATTGACGAATGTGGTTTGCAGGCGGAACACTGCGAGGACAAGCATCAACAAATTTGGTCCAAAATTTCCCACATCCCCACCATTCTAGTCGATGGCATACGAATTTCTGCAATTTCATTCCTATCACCTTCACTCAATGTTAATGGCTTGGCCAACGTTGTTCTTGACCGGCTCATTTCATCTGAGTTTCTCAACTTGGTGGTGGGCAAGAAGCTGGATCGGAAATTGGTTGACAGGCTGAAGACTGCTATCTTGGCTGCCAAAGCTCTGGCTGCTGATGCTGAGCAGAAGCAGTTTGGACACAAACTCGTGAGGGAGTGGCTTGATAGTCTCAAAGATGCTCTCTACACTGCTGATGACTTGCTGGACCGTGTCTTCATCAAAGCTGAAATTCGAAACAAGGTACACATTCGTCTTCCTCACTTCCTTGATCTGTCTGGTAGGAAGATGGTGACTAAGATAGAAGAGGTGGTTGAAAGAATAGTAGATCTTGAGAAACGCAAAGATACCCTTGGTCTCAGAGAGATTCAAACAGGAAGCTCTTCATGGAGACCTCCATCCACTTCTCTTGTGAAGGGGAATGTGTTCGGCAGGGATAGTGACCAACAGGCACTAATCAAGATGCTCAATGACAACAATCATCATAACTTGTCCGTCATCTCTATTGTTGGTATGGGCGGTGTTGGTAAAACTACTTTAGCACAATGGCTCTACAACAATAAGGATTTGATGGACGGGGTTGATCTGAAAGCATGGATTTGTGTTTCTGAAAATTTTGATGTTGTTGAGACTACTAAGAATGTTATAAAGGGGATCTCTTCAGGTGTTTGTAGTCTTGACGGCTTTGATTTACTTCAACAATATTTGAAGGAAAAACTGTCAGAAAAGAAGTTCTTCATTGTTTTGGACGATGTTTGGAGTGAAGATGCTGACAAGTGGAATAGTTTTATCACCCCTTTTCAACATGGGACAAAGGGAAGCACTATTCTTCTAACTACCCGCATGGTAAATGTTGGTCGAATAGTCCAACACTATAACTCTTACACCCTCAATCAACTGTCAGATGATTATTGTTGGTCTATTTTTGCGGATAATGCATCCTTTCCTAAATCAAATGGGAGCTCAGAACTGGAAGGAATAGGTAGAAAGATTGTCGAGAGGTGTGATGGCTTGCCATTAGCTGCAGAAACACTTGGTCGCTTGTTGCGCTCAGAGCGTCGTGTTGAAGAATGGAATAAAATACTATCGAGTGACATTTGGGAATTTTCTGTGGCAAATTGCAAGATTGTTCCTGCATTGTTATTAAGTTACCATCATCTGCCTACTCATTTAAAAGGTTGCTTTGTTTATTGTTCATTGTATCCCAAAGATTATAAACTTGATAAAGATGAATTAATCTTGCTATGGATGGCTGAAGATCTTTTGCGACCACGAAGCAGGGGACAGACTCTAGAAGAAGTTGGTTGCGAGTGTTTTGATGATTTGGCTTCAAGACTATTTTTCAAGCAGGTCAATAACGATCGTGAGAAGTATTTCGTAATGCATGATCTCATGCATGACTTGGCAATTTTTCTTGCTGGAAAATTTTGTTGTAGACTATCTGAAGAACTTGGTGAAAAGGAAGAAATGAGTATTCTAACTCGTCATTTGTCATACGGTGATTCAATCCCTGAGAAAACATGCTCCTCTAATAAAATAGAATCTTTGAGGACCTTACTGTATACCAATCATAGAGCTGGTTTCTGGAAAGCACGCGCAACATTACCATGTGACATATTGTCAAAGAATAAATACCTAAGAGTTGTATCCTTTGATATACTCCCTATATATCCTGATTCAATAGCTAAATTGATCCAACTGCGCTATTTGGATCTTTCTAGGAGTGATATTGAGGTATTGCCACCGTCATTATGCAACTTGTGCAATCTACAAACTTTAAAGTTAGAAGGTTGTTCAAAGCTGACTATGCTGCCCAATGGCATGTATAATCTTGTGAATTTGCGGCATCTTAATATAAAGGGTACTCCTCTGAAAGAAATGCCAAAAGGAATGGGCAAATTAAAACAGTTGCACGTTTTAAGCAAGTTTGTGGTGGGAAAGCAAGAAGACAAAAGAATCGAAGAGTTAGGAGGGCTTTTAAATCTTCATGGATCACTTGAGATTCAGAAATTGGAGAATGTGGTTGATGCCAATCAGGCAAGGAGTGCAAGGATAACAGATAAGAAGCACATTGAGGAGTTATTGTTGGAATGGTCTTCAAGTGATGATATAGTTTCAAACACACATACTAATGAACAAGATATCCTCCACAGCTTGCAACCGGACACTGGCTTGAAGGAGTTGCAAATCAAGGGATACAAGGGTACAATATTTTCCGACTGGTTGGGGCGCTGTTCCTACAAAAATATGACACGTGTAACTCTGGCGTCCTGCAAGAATTGCTGTATGCTGCCTTCACTTGGACAGCTGCCTTCTCTTAAGTCCCTGTGCATCGAAAGTTTTGATGAGCTGAAGAGCATTGGCAAGGAGTTTTACAAGAATGAAGGCCATCAACATTCTTCGCCTATTGCACCGAGTGGCACTTACCTGACTCAGAAGCCTTTCCTCAGCTTAAGAGCCTTCTTATAA 6696 0.4189 MTSWEEWHLPDSEAFPQLKSLQIRHCPMLKGDMVNQVFMRIVSSSSDVSKVRQLKIRDHRPRWAKEMRLDGDRLSISGFKCVVEYAFKAKIIHHLTSLQEIQISGIGECKEQLRGLSWMGNLDNLTHLTISNCDGGESSIKSYPEVGWLPRLPSLTTLYLFNFKNLETLECNELLRLTSLQQLLISNCPKLKNMEGEKLPSSLQQLHISWCETLENIAGEKLPPSLLLLQLDGCGLLGEHCKNKHQQVWSKISHIPTIILFLILRKALVSGLANVVLDRLISSEFVNLVVGKKLDRKLVEKLKTAILAAKALAADAEQKKFGNELVREWLDSLKDALYTADDLLDRMVTKIEEVVERIEDLERRKDTLGLREIQIGSSSWRPPSTSLVKGNVFGRDADQQALIKMLNDNNHHNLSVISIVGMGGVGKTTLAQWLYNNKDLMDGVDLKAWICVSENFDVVETTKNVIKGISSGVCSLDGFDLLQQHLKEKLSEKKFFIWNSFITPFQHGRKGSTILLTTRMVNVGQIVQHYNSYTLNQLSDDYCWSIFADNASFPKSNGSSELEGIGRKIVERCDGLPLAAETLGRLLRSERRAEEWNKILSSDIWEFRLANCKIVPALLLSYQHLPIHLKRCFVYCSLYPKDHKLDKDELILLWMAENLLQPPRREQTLEEVGCECFDDLVSRLFFKQVENEDEKYFVMHDLMHDLAIFLAGKFCCRLSEELGEVEEMSILTRHLSYGDSNPAKTCSSNKIESLRTILYTNRGAAFWKAHATLPCDILSKNKYLRVVSFDIRPIYLDSIAKLIQLRYLDLSWSDIEVLPPSLCNLCNLQTLKLEGCSKLTMLPNGMSNLVNLRHLNITDTPLKEMPKGMGKLKQLHVLSKFVVGKQEDKRIQELGGLLNLHGPLEIQKLENVVDANEARSSRIIDKKHIEYLLLKWSSGDDMVSNTHTDEQDILQGLQPHTGLKELEIKGYKGTTFSDWLGRCSYKNMTRVTLKSCKNCCMLPSLGQLPSLKFLRIEKFDQLKSIGKEFYKNEGHQHSSPIAPFSSLEELIFHNMPSWEEWQLPDSEAFPQLKILQIRGCPMLKGDMVNQVFMRIVSSSSDVSKVRRLKIQEDNGGWGKEMRLDGDSLTISGFESVAEYAFKARIIHHLTSLQEIHISWCSSVVSMGGNCLPKSLQKLKIVFCGEIELLQQQHKYDLPPHAALQRLSITRCSKFVSLPSDMNSLLPNLESLDIRGCPNICRLPEGGLPANLKELSVGDCEQQVRSLSWLGNLDNLTHLTISGHGSESRIKSYPEVGWLPRLPSLTTLHIRAFYNLETLECNELLRLTSLQQLHIEFFMNLKNIAGEKLPPSLLLLKIDECGLQAEHCEDKHQQIWSKISHIPTILVDGIRISAISFLSPSLNVNGLANVVLDRLISSEFLNLVVGKKLDRKLVDRLKTAILAAKALAADAEQKQFGHKLVREWLDSLKDALYTADDLLDRVFIKAEIRNKVHIRLPHFLDLSGRKMVTKIEEVVERIVDLEKRKDTLGLREIQTGSSSWRPPSTSLVKGNVFGRDSDQQALIKMLNDNNHHNLSVISIVGMGGVGKTTLAQWLYNNKDLMDGVDLKAWICVSENFDVVETTKNVIKGISSGVCSLDGFDLLQQYLKEKLSEKKFFIVLDDVWSEDADKWNSFITPFQHGTKGSTILLTTRMVNVGRIVQHYNSYTLNQLSDDYCWSIFADNASFPKSNGSSELEGIGRKIVERCDGLPLAAETLGRLLRSERRVEEWNKILSSDIWEFSVANCKIVPALLLSYHHLPTHLKGCFVYCSLYPKDYKLDKDELILLWMAEDLLRPRSRGQTLEEVGCECFDDLASRLFFKQVNNDREKYFVMHDLMHDLAIFLAGKFCCRLSEELGEKEEMSILTRHLSYGDSIPEKTCSSNKIESLRTLLYTNHRAGFWKARATLPCDILSKNKYLRVVSFDILPIYPDSIAKLIQLRYLDLSRSDIEVLPPSLCNLCNLQTLKLEGCSKLTMLPNGMYNLVNLRHLNIKGTPLKEMPKGMGKLKQLHVLSKFVVGKQEDKRIEELGGLLNLHGSLEIQKLENVVDANQARSARITDKKHIEELLLEWSSSDDIVSNTHTNEQDILHSLQPDTGLKELQIKGYKGTIFSDWLGRCSYKNMTRVTLASCKNCCMLPSLGQLPSLKSLCIESFDELKSIGKEFYKNEGHQHSSPIAPSGTYLTQKPFLSLRAFL* 2232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0109 2231 PRINTS Disease resistance protein signature 1575 1590 - -
Amo12g0109 2231 PRINTS Disease resistance protein signature 1648 1662 - -
Amo12g0109 2231 PRINTS Disease resistance protein signature 1744 1758 - -
Amo12g0109 2231 PRINTS Disease resistance protein signature 1994 2010 - -
Amo12g0109 2231 Pfam NB-ARC domain 1557 1772 IPR002182 GO:0043531
Amo12g0109 2231 Pfam NB-ARC domain 398 601 IPR002182 GO:0043531
Amo12g0109 2231 Gene3D Ribonuclease Inhibitor 1916 2209 IPR032675 -
Amo12g0109 2231 Gene3D - 1544 1703 IPR027417 -
Amo12g0109 2231 Gene3D - 385 532 IPR027417 -
Amo12g0109 2231 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 382 636 IPR027417 -
Amo12g0109 2231 Pfam Rx N-terminal domain 1430 1488 IPR041118 -
Amo12g0109 2231 Pfam Rx N-terminal domain 295 353 IPR041118 -
Amo12g0109 2231 Gene3D - 537 620 IPR042197 -
Amo12g0109 2231 Gene3D - 1708 1791 IPR042197 -
Amo12g0109 2231 Coils Coil 344 371 - -
Amo12g0109 2231 SUPERFAMILY RNI-like 1044 1390 - -
Amo12g0109 2231 Gene3D Ribonuclease Inhibitor 746 882 IPR032675 -
Amo12g0109 2231 Gene3D - 274 369 - -
Amo12g0109 2231 Gene3D - 1411 1523 - -
Amo12g0109 2231 Coils Coil 1510 1530 - -
Amo12g0109 2231 Pfam Leucine Rich Repeat 1227 1244 IPR001611 GO:0005515
Amo12g0109 2231 SUPERFAMILY L domain-like 1869 2198 - -
Amo12g0109 2231 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1541 1807 IPR027417 -
Amo12g0109 2231 PANTHER OS05G0414200 PROTEIN 284 1166 - -
Amo12g0109 2231 PANTHER OS05G0414200 PROTEIN 1419 2212 - -
Amo12g0109 2231 Coils Coil 1433 1453 - -
Amo12g0109 2231 Coils Coil 299 319 - -
Amo12g0109 2231 SUPERFAMILY RNI-like 15 242 - -
Amo12g0109 2231 Gene3D Ribonuclease Inhibitor 2 261 IPR032675 -
Amo12g0109 2231 Gene3D - 1792 1879 IPR036388 -
Amo12g0109 2231 Gene3D - 621 708 IPR036388 -
Amo12g0109 2231 Gene3D Ribonuclease Inhibitor 898 1094 IPR032675 -
Amo12g0109 2231 Gene3D Ribonuclease Inhibitor 1126 1246 IPR032675 -
Amo12g0109 2231 Gene3D Ribonuclease Inhibitor 1247 1410 IPR032675 -
Amo12g0109 2231 SMART LRR_typ_2 849 872 IPR003591 -
Amo12g0109 2231 SMART LRR_typ_2 802 825 IPR003591 -
Amo12g0109 2231 SMART LRR_typ_2 1973 1996 IPR003591 -
Amo12g0109 2231 SMART LRR_typ_2 2020 2043 IPR003591 -
Amo12g0109 2231 SUPERFAMILY L domain-like 695 1189 - -
Amo12g0109 2231 PANTHER DISEASE RESISTANCE PROTEIN RP 284 1166 IPR044974 GO:0006952
Amo12g0109 2231 PANTHER DISEASE RESISTANCE PROTEIN RP 1419 2212 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0109 Amo-Chr12 1476927 1502261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0109 1572 1766 WRKY Transcription Factor Family AT5G45050 25.243 2.52e-07 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0109 - - adu:110277895 1633.62