Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0099 ATGATCACTGATGTACCTTCTTCTTCTTCCTCTCCCTCTCCCACCGTCAAGACCCGTAGATGGATCAACCATGTATTCATCAGTTTCAGGGGTGAAGACACCAGAAAAGGCTTCACAGATCACCTTTATGCTGCACTGGAAAGAAGGGGTTGTATCAAAACTTTCAAGGATGATCATGACCTTGAGAATGGGGAAATCATATCTGAAGGGCTCATCAAGGGAATTCAAGAGTCCATGTTTGCGCTTGTTGTCCTCTCACCAAACTATGCTTCCTCAAGATGGTGCTTGGATGAGCTGCAAAACATCATTGAGTGCAGGGAAAAGTTTAACCAAGTGGTTTTTCCTATCTTCTATGGTGTAGAATCCTCTGATGTAAGGTATCAGAGAGGAACCTTTGAAGAAGCTTTCAGAAAACATGAAGAGAGGTTCAAGGAAGAGAAGGGGAAAGTCGAAAGATGGAGAGATGCATTGCAAAAAGTTGCAAGTTATTCCGGTTGGGACTCCAAAGATAGTCATGAGGCAGCATTGATTGAAAGAATTGTTGATCACATACAAAAATTACTGATTCCTAAGTTGCCATCATGGGTAGGAAACCTCGTTGGTGTTGAATCAAGGATGAAAAAGTTGAATTCACTCATCGGTATGCAGTTGGATGACATTCGCTTCATAGGTATATGGGGCATGGGAGGCATAGGAAAAACAACAACTGCCACATTAATATATGAATCAATCAAAGAGCAGTTCAACTTTAGTTGCTTTCTTGCAAACATTAGAGAGGTTTCTGCAAAAAATGGCATAGTTCACATCCAAAGGGAACTTCTTTCTCATCTTTCTGTAAGAAGTAATTACTTTCATAATTTGTTTGATGGGGTAAAAATAATAGCAAACTCTTTGCACAACAAAAAGGTCCTCCTTGTTCTTGATGATATAAGTGAAAGAAGCCAATTAGAGAACTTAGCCGGAAAACAAGAATGGTTTGGTCCCGGTAGCAGAATAATCATCACTACTAGAGATAAGCATCTGCTAATGACACATGGCGTGCATCAGACATGCGAGCTTGAAGGCTTAGTTCAGAAAGAAGCCCTTCATTTATTCTGTCTGAAAGCTTTTAAACAAGATCAACCCAAAAGCCAATATCAGAATTTGTGCAGGGAAGTGGTTGAATACACAAGAGGCCTTCCATTGGCACTTGAAGTATTGGGATCCCATCTTTGTGGAAGAACTCCTGAGGCTTGGGATAGTGCTTTAAAGCAATTAAGAAGTTCTCCACACCCTGAAATCCAAAATTCATTGAAAATAAGTTTTGAAAGTTTGGCTAGCACAGAGAGAGAAATGTTTTTGGATATTGCTTGTTTCTTCAAAGGCATGAACAAGGATGAAGTAGTAAAAGTGTTAGAAAATTGTGGTCATTTTCCACAAATTGGAATTGAAATTTTGATTGAAAAATCTTTCGTCACTCTTGGTTGGGGTAATAAATTGGAAATGCATGATTTACTTGAAGAAATGGGAAAGAATATAGTGTTTCAAGAATCTCCAAATGATCCAGGAAAACGTAGTAGATTGTGGTCTCATGATGACATCAGCCGTGTGTTGACACAAAATAAGGGAACTGAAGCAATTCAAGCAATAGTACACTATACTCGAGAAAATGAAGCAAGATGGAGCTCTGAAGCTTTCTCCAAGACCAGCAACATAAGGTTGCTAAAGATACGTGATCCGTGTCGTCTTTCCCATGGCCTTGATTGCCTTCCTTATGCACTCAGAGTTCTTGACTGGCTAGGATGCCCTCTGAAAACTCTGCCACTTACTGATCAGCTGGATGTTGTTGACATCAATTTGTCTTGGAGCAAAATTAAACAACTTTGGCACGGAAAAAAGATTTTACATAAGTTGAAGTGCATCAACTTGAGTTTTTCCCAGAACCTTAACCAAACCCCTGACTTTGTGGAGGTTCCGAATCTCGAATCGTTAGATCTTGGAGGCTGTAAAAGGTTAACCAAAATCCATTCATCTGTTATGCACCTCAAGAAACTTGTTCAATTGAACTTAGAAGGCTGCAAAAGGCTCAAAGCTCTTCCAGGTAAAATGGAGATGAGTTCATTAAAGGTTTTAAATCTTTCTGGTTGCTCAAACATGAACACCATCCCAGACTTTGGGAATTGCATGGGACATCTAGAAGAGCTTCGTTTGGATGGAACTGCTGTAACAGAGCTACCTTCATCATTAGGATGTCTGGTTGGACTTGTTCTTTTGCATTTACAGAATTGCAGGTATCTTGTTTGCCTTCCGGATACCATTCATAAGTTGAAGTCCCTCAAAGTTCTTAATGTTTCTTATTGCTCGAAACTCCGTAGCTTGCCAGAGTGCCTACAGGAAATGAATAATCTGGAAGAACTTTATGCAAGCAATACTGCCATTGAAGAACTACCTTTATTTTTATGTTATCTAGAAAACATCAAAGTAGTGTCATTTGCTGGTTGCAAAGAGTCAACATCCGTGTTAAATTGCTTTCGAGTTCCATCTGCTGTTTGCCGTCCATCCCTTTTGATAAGGTTAGATTTAAGTTATTGCAATCTACTTGCTGAATCAATACCAGATGGTTTTTGTGGCATATCGCTGAGGGATTTGGATCTTTCTGGCAACAACTTTGTTAACCTACCAAGCGACATTTCCAAACACTCTACGCTTGAATATCTCTGTCTAAACTCGTGCAAGAAGCTTCAGTCATTGCCTGAGCTTCCATTAAGCATAAAAAGAATAGATGCAACCAACTGTTCCTCATTGGTAGCTTCTGTACAATGGCACTTACCAAGAGAACGGAAGGGGATTTGCTTTCCGAGAACACCATTCGACATGCTTATCACAGGCAATGAAATTCCATCATGGTTTGCACCTCTAAAGTCCTCTTCCTTTGCAGAAATACCATTTCCTCATCCTTCTCCTCCAACTGAATGGCTGGGATTTGCTCTCTGTTTCTTGCTGGTAGCGGATCGGCCTCTGAAGGGTTACCATGCAGAGATCGGTTGTTTCACGGCAACACAAACATCATTAGAGTCCCGCATACTCGTACCAGATATTCAGGCCAAAAAAATAACGGTACCGGATAAAGATGATTGGAGGGCTGAGTCTCCCCCAAAACAACCTCACCTTTTCATTCTCTTTCTGTCCATTGGAGAATACCTTGAAAGAATGCATACAGGTTATGGATTTGGTTTGATGAGTTGGTCTATCTGTTCATTGAGAATAGTGCAGGCTGGGTGTCGTCTGGTGTGCAAGGAAGATGTTCAAGATATTTATGGAAATCATTCCCATACTTCCTCTGTAGGGCCTAATAAAAAACAAACAAAAAACAAACAATCGCGATGGGCCAAACCCATAACCTTTCTTTCTTTTTGTTCTACTCCAACGGCACACACAAACACTAAAAAAAAAAGAACTTTAATGCAGCAATACACACGTGTGGGCGAGTATGTAATGCCTATGTTGTTGTTGTGGTTGTTGTGTGGACAAGAAATTTGA 3519 0.4027 MITDVPSSSSSPSPTVKTRRWINHVFISFRGEDTRKGFTDHLYAALERRGCIKTFKDDHDLENGEIISEGLIKGIQESMFALVVLSPNYASSRWCLDELQNIIECREKFNQVVFPIFYGVESSDVRYQRGTFEEAFRKHEERFKEEKGKVERWRDALQKVASYSGWDSKDSHEAALIERIVDHIQKLLIPKLPSWVGNLVGVESRMKKLNSLIGMQLDDIRFIGIWGMGGIGKTTTATLIYESIKEQFNFSCFLANIREVSAKNGIVHIQRELLSHLSVRSNYFHNLFDGVKIIANSLHNKKVLLVLDDISERSQLENLAGKQEWFGPGSRIIITTRDKHLLMTHGVHQTCELEGLVQKEALHLFCLKAFKQDQPKSQYQNLCREVVEYTRGLPLALEVLGSHLCGRTPEAWDSALKQLRSSPHPEIQNSLKISFESLASTEREMFLDIACFFKGMNKDEVVKVLENCGHFPQIGIEILIEKSFVTLGWGNKLEMHDLLEEMGKNIVFQESPNDPGKRSRLWSHDDISRVLTQNKGTEAIQAIVHYTRENEARWSSEAFSKTSNIRLLKIRDPCRLSHGLDCLPYALRVLDWLGCPLKTLPLTDQLDVVDINLSWSKIKQLWHGKKILHKLKCINLSFSQNLNQTPDFVEVPNLESLDLGGCKRLTKIHSSVMHLKKLVQLNLEGCKRLKALPGKMEMSSLKVLNLSGCSNMNTIPDFGNCMGHLEELRLDGTAVTELPSSLGCLVGLVLLHLQNCRYLVCLPDTIHKLKSLKVLNVSYCSKLRSLPECLQEMNNLEELYASNTAIEELPLFLCYLENIKVVSFAGCKESTSVLNCFRVPSAVCRPSLLIRLDLSYCNLLAESIPDGFCGISLRDLDLSGNNFVNLPSDISKHSTLEYLCLNSCKKLQSLPELPLSIKRIDATNCSSLVASVQWHLPRERKGICFPRTPFDMLITGNEIPSWFAPLKSSSFAEIPFPHPSPPTEWLGFALCFLLVADRPLKGYHAEIGCFTATQTSLESRILVPDIQAKKITVPDKDDWRAESPPKQPHLFILFLSIGEYLERMHTGYGFGLMSWSICSLRIVQAGCRLVCKEDVQDIYGNHSHTSSVGPNKKQTKNKQSRWAKPITFLSFCSTPTAHTNTKKKRTLMQQYTRVGEYVMPMLLLWLLCGQEI* 1173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0099 1172 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 166 IPR035897 -
Amo12g0099 1172 Gene3D - 356 439 IPR042197 -
Amo12g0099 1172 Pfam TIR domain 24 186 IPR000157 GO:0007165
Amo12g0099 1172 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 24 765 - -
Amo12g0099 1172 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 750 1021 - -
Amo12g0099 1172 Gene3D Ribonuclease Inhibitor 544 719 IPR032675 -
Amo12g0099 1172 Gene3D Ribonuclease Inhibitor 720 933 IPR032675 -
Amo12g0099 1172 ProSiteProfiles Leucine-rich repeat profile. 872 893 IPR001611 GO:0005515
Amo12g0099 1172 Gene3D - 188 351 IPR027417 -
Amo12g0099 1172 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 449 IPR027417 -
Amo12g0099 1172 SMART till_3 22 163 IPR000157 GO:0007165
Amo12g0099 1172 MobiDBLite consensus disorder prediction 1102 1121 - -
Amo12g0099 1172 SMART LRR_typ_2 793 814 IPR003591 -
Amo12g0099 1172 SMART LRR_typ_2 871 893 IPR003591 -
Amo12g0099 1172 SMART LRR_typ_2 722 745 IPR003591 -
Amo12g0099 1172 Gene3D - 17 187 IPR035897 -
Amo12g0099 1172 Pfam NB-ARC domain 218 439 IPR002182 GO:0043531
Amo12g0099 1172 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 765 IPR044974 GO:0006952
Amo12g0099 1172 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 750 1021 IPR044974 GO:0006952
Amo12g0099 1172 SUPERFAMILY L domain-like 547 916 - -
Amo12g0099 1172 SUPERFAMILY "Winged helix" DNA-binding domain 426 531 IPR036390 -
Amo12g0099 1172 PRINTS Disease resistance protein signature 297 311 - -
Amo12g0099 1172 PRINTS Disease resistance protein signature 222 237 - -
Amo12g0099 1172 PRINTS Disease resistance protein signature 390 404 - -
Amo12g0099 1172 PRINTS Disease resistance protein signature 696 712 - -
Amo12g0099 1172 ProSiteProfiles TIR domain profile. 21 188 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0099 Amo-Chr12 1334155 1340439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0099 11 854 WRKY Transcription Factor Family AT4G12020 30.310 1.92e-109 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0099 - - ahf:112733264 2092.78