Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0088 ATGGAAAACCAAGATCCTTCACCACCACAATTGTTGCTACCACCACCACAACAAGATCATCATCACTCTCATAATGATAATAATATTCATGACGAGTCTCAATATAATCCATTGTTCTTCTTGCCACCACCACCTTCTCCTTCTTCCTCCATCATGATGATGCAAAACCCTTTGGTGCAAGAAAATATTGATTGGGTTAGTTTCCTCTCTAATGGAGAAAACAACAACTTGTTTATTGGAGATAATCATAATACCAATAAAGAAACAACAATGGAATGTGCTTCTTCTTTTTATGCTTCTACTTCTACCTCTACTACTTCTATGCCTGTGGATGATATTCTTGATGATGGTTACCGATGGAGAAAATATGGACAGAAAGCTGTGAAGAACAGCATGTATCCAAGAAGCTACTACCGGTGCACTCATCATACATGCAATGTGAAGAAACAAGTTCAAAGGTTGTCCAAAGACACAAGCATAGTGGTGACAACTTATGAGGGAATTCATAATCACCCATGTGAGAAGCTCATGGAAACCCTAACTCCTCTTCTCAAGCAAATGCAATTTCTAGCTAGCTTCTAA 582 0.3849 MENQDPSPPQLLLPPPQQDHHHSHNDNNIHDESQYNPLFFLPPPPSPSSSIMMMQNPLVQENIDWVSFLSNGENNNLFIGDNHNTNKETTMECASSFYASTSTSTTSMPVDDILDDGYRWRKYGQKAVKNSMYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQMQFLASF* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0088 193 ProSiteProfiles WRKY domain profile. 109 174 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo12g0088 193 PANTHER WRKY TRANSCRIPTION FACTOR 43-RELATED 98 189 - -
Amo12g0088 193 MobiDBLite consensus disorder prediction 1 42 - -
Amo12g0088 193 Pfam WRKY DNA -binding domain 115 172 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo12g0088 193 SUPERFAMILY WRKY DNA-binding domain 112 173 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo12g0088 193 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 98 189 IPR044810 GO:0003700
Amo12g0088 193 Gene3D WRKY domain 98 173 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo12g0088 193 SMART WRKY_cls 114 173 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0088 Amo-Chr12 1157374 1159317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0088 111 193 WRKY Transcription Factor Family AT5G41570 80.723 1.24e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo12g0088 WRKY 1.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0088 - - cit:102625580 182.956