Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0085 ATGCAAGCACTCGGCTTCCTCTTCCTCCTCTCCACAATCATCCTCTCTTCCTACCTCTGCTGCCGCGCTCTCCGCCACAACAACGACAACAATAACCGCCGCAGGAACCAAAACGACGGTGTSGTTTTGCCYCGTGTCATTTTCGTAGCTGAGAACGACGTTGAAAATAACCAGCCTGGTGGAGGAAACGACAGCGCCGTTTTGGGTCTGGACCAGATCGTAATTAACTCGTACCCTAAGTTTCAGTTTAACGGCAACAACGACGTCGATGTTGACAGCGTGTGTTCGATTTGTTTGTGTGAGTACAAGGATTCGGAGATGCTGAGGATGATGCCGGAGTGTCACCACTGCTTCCACGTGTCATGTCTTGATTCGTGGCTCAAGCTTAATGGTTCTTGCCCTGTTTGCCGGAACTCTCCGATGCCGACGCCGCTACCCACGCCGCTGCAGGAGGTGGTGCCGCTCTCTCTCTATGCCGCTGATAGGAGGGGAAGGAGTTGA 501 0.5309 MQALGFLFLLSTIILSSYLCCRALRHNNDNNNRRRNQNDGVVLPRVIFVAENDVENNQPGGGNDSAVLGLDQIVINSYPKFQFNGNNDVDVDSVCSICLCEYKDSEMLRMMPECHHCFHVSCLDSWLKLNGSCPVCRNSPMPTPLPTPLQEVVPLSLYAADRRGRS* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0085 166 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Amo12g0085 166 Pfam Ring finger domain 95 137 IPR001841 -
Amo12g0085 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 141 IPR013083 -
Amo12g0085 166 SMART ring_2 95 136 IPR001841 -
Amo12g0085 166 PANTHER RING-H2 FINGER PROTEIN ATL67 3 164 IPR044289 GO:0016567|GO:0016740
Amo12g0085 166 SUPERFAMILY RING/U-box 87 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0085 Amo-Chr12 1142405 1143394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0085 69 163 C3H Transcription Factor Family AT2G35910 51.579 1.00e-31 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0085 - - adu:107472862 318.931