Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0058 ATGACCGACGTTAATGCCATAAAAAACGGTTATCCCGAGAACATGATGATACCTAGCTGTGCCTGCTACCCATTGGAACACAGCCCTCTCTCCATTCCCATCGTCAATGCAACACCACCACTTCCACCGCCTCATTGGACTCATCATCATCTTCACAGGATGGAGGCAATGGCGGCCACAACAGACATGGCAGTGCCAATGCAAATTACCTTACCGTTATCAGCCATATCAGGGGCAACAAGAGAACAAAACCGACATGGCAACAGTAACATAATCCAACACCAACCTTTACCTATGGCTTCTAGTGACAACAATAAATGGCAACAAATAGTTCATTGGACTTTACAAGAGCACAAGTTGTTTCTCCAAGGCTACGAAGAATTAGGAAAACAATGGTCAAGAATTTCAAGTGAATATGTTAAAACAAGAACTTACGCACAAGTTATTAGTCACTCTCAAAATTTTTTTGAACGCCAGGAGAAAAGAGCTAGAGGAGAAAATCTAAGAAGAAAGAGTATACATGACATAATTGATTATCGTACGTGGTTTTTTTACTATTCTAAAAATTATTTAATTTGTTACTCTAAATTCTTTGAATTATTTAATCATGGTAGTTATTCTATTTTAATTAATGTTTTATGTAAGAACTATAACATAATATGTGTGTTTTATTGGACCAAAGAGAATTTACGAAAAGTGGAGGAGACTATTCAAGCAAGAAAAATATATAAATGA 735 0.3646 MTDVNAIKNGYPENMMIPSCACYPLEHSPLSIPIVNATPPLPPPHWTHHHLHRMEAMAATTDMAVPMQITLPLSAISGATREQNRHGNSNIIQHQPLPMASSDNNKWQQIVHWTLQEHKLFLQGYEELGKQWSRISSEYVKTRTYAQVISHSQNFFERQEKRARGENLRRKSIHDIIDYRTWFFYYSKNYLICYSKFFELFNHGSYSILINVLCKNYNIICVFYWTKENLRKVEETIQARKIYK* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0058 244 PANTHER TRANSCRIPTION FACTOR SRM1 48 177 - -
Amo12g0058 244 Pfam Myb-like DNA-binding domain 112 154 IPR001005 -
Amo12g0058 244 ProSiteProfiles SANT domain profile. 113 160 IPR017884 -
Amo12g0058 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 113 160 IPR017930 -
Amo12g0058 244 SMART sant 109 158 IPR001005 -
Amo12g0058 244 SUPERFAMILY Homeodomain-like 108 161 IPR009057 -
Amo12g0058 244 Gene3D - 112 161 - -
Amo12g0058 244 PANTHER TRANSCRIPTION FACTOR KUA1 48 177 - -
Amo12g0058 244 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 111 159 IPR006447 GO:0003677
Amo12g0058 244 CDD SANT 113 151 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0058 Amo-Chr12 933605 934560 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo12g0058 Myb_DNA-binding 7.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0058 - - aip:110269155 98.2117