Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0052 ATGGCTGAAGCACTTGTTGTTGGAGCTCTAGTTTCTGGCTTCGCCAACGTTGTCCTTGACAGGCTCATTTCATCTGAGTTTGTCAACTTGGTGGTGGGCAAGAAGCTGAACCGGAAGTTGGTGGAGAGGCTCAAGACTGCTATCTTGGCTGCCAAAGCTCTGGCTGCTGACGCTGAGCAGAAGCAGTTTGGAAACGAACTCGTCAGAGAATGGCTTGATAATCTCAAGGATGCTCTCTACACTGCTGATGACCTGCTGGACCGTGTCTTCATCAAAGCTCAAATTCGCAGTAAGGTACGCACTCGGCTTCCTCACTTCCTTGATCTGTCTGGTAGGAAGATGGTGACTAAGATAGAAGAGGTGGTTGAAAGAATAGTAGATCTTGAGAAACGCAAAGATACCCTTGGTCTGAAAGAGATTCCAACGGGTAGCTCCTCATCATGGAGGCCTCCATCCACTTCTCTTGTGAAGGGGAATGTGTACGGCAGGGATGGTGACCAACAGGCATTAATCAAGATGCTACATGACAACAATGATCATCACTTGTCCGTCATCTCTATTGTTGGTATGGGCGGGGTTGGTAAAACAACTTTAGCACAATGGCTCTACAACAATGAGGATTTGATGAAGGGGTTTGACCTGAAAGCTTGGATATGTGTTTCTGAAAATTTTGATATTATTGAAACTACAAAGAATGTCGTCAAGGGGATCAATTCAGGTATTAAGGAAAAGCTGTCAGAAAAGAAGTTCTTCATTGTTTTGGACGATGTTTGGAGTGAAGATGTTGACAAGTGGAATAGTTTTGTCACCTCTTTTCAACATGGGAGAAAAGGAAGCACTATTCTTCTAACTACCCGCAAGGAAAATGTTGGTCCAATAGCCCAAAATTATAATGCTTACTTTCTTGAGGGACTGTCAGATGATTATTGTTGGTCTATATTTGCGGACAATGCATCCTTTCTAGAATCTAATTGGAGTTCAGAATTGGAAGGAATAGGTAGAAAGATTGTCAAGAAGTGTGATGGCTTGCCGTTAGCTGCAGAAACACTTGGACGCTTGTTGCGCTCAAAGCATGATGTTAAGGAGTGGAATAAAATTTTACTGAGTGACATTTGGGAATTTCCCATGACGGACAGTAAGGTTGTTCCTGCATTGTTAATAAGTTATTATCATCTACCTGCACACTTAAAACGCTGCTTTGTCTATTGTTCATTGTATCCCAAAGATCATCAATATGATAAAGATGAATTAATTTTGTTATGGATGGCCGAAGATCTTTTACGACCACCAAAGAGGAGAGAAACTTTAGAAGAAGTTGGTTGCGAGTGTTTTGATGACTTGGCTTCAAGACTTTTTTTCAAGCAGGTCGAGGGTRATGATGAGAAGTATTTTGTGATGCATGATCTCATGCATGACTTGGCAACTTTTCTTGCTGGAGAGTTTTATTGTAGATTATCCGAAGAACTCGATGAAAAGGAAGAGATGAGGATTCTAACTCGTCATCTGTCATACAATCATTCAATCTCTCAAAATACTTCTTATAAAATAGAATCTCTGAGGACATTGTTGTATATCAATCATAGTCCTTTTTCAATCCGGAAAGAAGGCACAGCGTTACCATATGGCATATTGTCAAAGAAAAATACCTAA 1650 0.4103 MAEALVVGALVSGFANVVLDRLISSEFVNLVVGKKLNRKLVERLKTAILAAKALAADAEQKQFGNELVREWLDNLKDALYTADDLLDRVFIKAQIRSKVRTRLPHFLDLSGRKMVTKIEEVVERIVDLEKRKDTLGLKEIPTGSSSSWRPPSTSLVKGNVYGRDGDQQALIKMLHDNNDHHLSVISIVGMGGVGKTTLAQWLYNNEDLMKGFDLKAWICVSENFDIIETTKNVVKGINSGIKEKLSEKKFFIVLDDVWSEDVDKWNSFVTSFQHGRKGSTILLTTRKENVGPIAQNYNAYFLEGLSDDYCWSIFADNASFLESNWSSELEGIGRKIVKKCDGLPLAAETLGRLLRSKHDVKEWNKILLSDIWEFPMTDSKVVPALLISYYHLPAHLKRCFVYCSLYPKDHQYDKDELILLWMAEDLLRPPKRRETLEEVGCECFDDLASRLFFKQVEGXDEKYFVMHDLMHDLATFLAGEFYCRLSEELDEKEEMRILTRHLSYNHSISQNTSYKIESLRTLLYINHSPFSIRKEGTALPYGILSKKNT* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0052 549 Gene3D - 388 476 IPR036388 -
Amo12g0052 549 Pfam NB-ARC domain 167 366 IPR002182 GO:0043531
Amo12g0052 549 Gene3D - 17 131 - -
Amo12g0052 549 PRINTS Disease resistance protein signature 184 199 - -
Amo12g0052 549 PRINTS Disease resistance protein signature 340 354 - -
Amo12g0052 549 PRINTS Disease resistance protein signature 244 258 - -
Amo12g0052 549 Coils Coil 41 61 - -
Amo12g0052 549 PANTHER DISEASE RESISTANCE PROTEIN RP 26 522 IPR044974 GO:0006952
Amo12g0052 549 PANTHER OS05G0414200 PROTEIN 26 522 - -
Amo12g0052 549 Coils Coil 118 138 - -
Amo12g0052 549 Pfam Rx N-terminal domain 37 97 IPR041118 -
Amo12g0052 549 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 403 IPR027417 -
Amo12g0052 549 Gene3D - 154 298 IPR027417 -
Amo12g0052 549 Gene3D - 304 387 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0052 Amo-Chr12 877977 879663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0052 182 362 WRKY Transcription Factor Family AT5G45050 27.692 1.11e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0052 - - ahf:112729504 1015.37