Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0042 ATGGCTGGAGTTCTTGTTGGGGGAGCTTTTCTCTCTGGCTTCATTAATGTTGTCCTCGACAGGTTCATTTCGGGAGAGACTTACAACTTGGTTGTGGGGAAGAAGCTTGGCTCTGAGTTGGTGAGAAGGCTGAGGACTGCTCTCTTGGCTGCCGAAGCTCTGGTTGCTGACGCTGAGCAGAAGCAGTTTGGTAAACAATCTGTGAGGAAGTGGCTGGATGATCTGAGGGATGCTGTCTACAAGGCTGATGACTTGCTGGACCGTTTCTGCATCAAAGCTGCAACTCAGAAACAGGTACCAACTTTCTTGCCGAGCTTCCTCAATTTTGAAAATAGGAAGATTGTCAATGAGATAGAAGAGGTTGTTAGAACAATAGAAGATCTTGAGAGATGCAAAGAAAGCCTTGGCCTGGAAAAAATTTCCACCAGTAGCTCTTCATGGAGGGCTCCTTCCACTTCTCTTGTAAGAGGGAATGTGTATGGCAGGGAGGATGACCAACAGGCCTTGATCAAGATGCTGAATGACAACACTGAGCATCACTTGTCTGTGATCTCTATTGTTGGCATAGGTGGGGTCGGTAAAACAACTTTAGCTCAATGGGTGTACAACAACGGGGATTTAATGAAGGAATTCGATCTGAAAGCATGGGTTTGCATCTCAGAGAACTTTGATATCGTTGAGATGACAAGGAATGTCATAAAGGGGATCCTTGGAGGTGCTTGGAGTCTCGACGATTTCAATTCACTTCAACATGTTTTAAAAGAAAAATTGTCAAACAAGAAGTTCTTTATTGTTCTTGATGATGTTTGGAGTGATGATGGTGACAAATGGAGTTATTTTATGACCCCTTTCCAATACGGGAAGAAGGGAAGTGTTGTTCTTCTGACTACTCGTGGGAAAAATGTTGCTCTAGCAGTTCAGAACTGTCGCCCTTATTTTCTGAAAGGGTTGTCAGAAGACTATTGTTGGTCAGTGTTTGCTAACAATGCATCTTTTCCAGAATCAAATGGGAGAGCAACACTTGAAGAAATAGGCAGAAAGATTGTCAAGAAGTGTGATGGTTTGCCATTAGCTGCAGAAACACTTGGTCGCTTGTTACGTACAAAGCATGATGTTGAGGAATGGAACAAGATACTAATGAGTGATATTTGGGGATTTTCTATGGAGAAGAGTAAGATTATTCCAGCATTACTGATAAGTTACTTCCATCTTCCTCCACATTTAAAGCTTTGTTTTGTTTATTGTGCTTTATTTCCCAAGGATTATAAATTTGATAAAAATAAATTAATCCTTTTGTGGAAGGCAGAAGAATTTTTACCACCACCAAAGAGAGGAGAAAGTTTAGAAGAAGTTGGTTGTGAGTGTTTTGATGAACTAAGTTCCAGATTATTTTTCACGAAGAGAGAAGGCTTTGGTCATTATTTTGTGATGCATGATCTCTTGCATGACTTAGCAATATTCCTTGCTGGAGATTTCTATTGCAACTCAGAAGAACTTGGTAAAGAAGAGGAGATAAGGATTCAGACTCGGCATTTGTGTGTAGATTTAAGTCATTGTAGCTCAAAACTTTATAATTCTATTTCTAAAGTAGAATCGTTGAGAACATTATTATTGTGTGGCAATTTCTCATCTCCCAACTTCAACATTGAAGCAGCAACATGTGAGATATTATCAAAGTGTAAATACTTGAGAGTTTTATCCTTTGATAAACTTGYTGTGTTGCCTAATTCAACAGGAGAATTGATCCATCTGCGCCACTTGGATCTCTCTTATACTCATATAAAGACATTGCCTGAGTCTTTGTGCAGCTTGTGTAATTTGCAAACATTGAAGTTATGTGGTTGTTATTGGCTAACTATGCTGCCTAGTGGTTTGCATAATCTTGTGAGTTTGCAGCATCTTGATATTAGAGAAACTGCTTTGGAAGAAATGCCCAGAAAAATGAGCAAATTGAATCAGTTGCATGTTTTAAGTTCCTTTGTGGTCGGCAAGCACGAAGACAATGGAATCCAGGAGTTAGGAGGGCTAGTAAATCTTCATGGACCCTTCAAGATTAAGAAGTTGGAGAATATTGTTGACGTGAAAGAAGCAAAGAGCGCAAAGATAATGGATAAGAAGCACATTGATGAATTATGCTTGGAATGGTCTTTAGGTGATGATTTGGTTTCAAGCACAGAAACAGAAAGAGACATTCTGGATAACTTGCAACCGCACAATGGGTTGAAAGAGTTGAAAATATGGGGATACAAGGGTACAATATTTCCAAATTGGATGGGACATTGTTCCTACCAAAACATGACAAGTGTATATCTAGAGTCTTGCAAGAATTGCTGCATGCTGCCTTCACTTGGGCAGCTGCCATCTCTCAAGTCCCTAGGCATTGAAGGTTTGGATCAGCTGAGGAGTATTGGCGAGGAGTTTTACAAGAATGAAGGAGATCGTCATTCTTCACATATTGCACCGTTTCCTTCACTTGAGAGTTTGGAGTTTGATAACATGGCATGTTGGGAGGTGTGGCATGTATCTGAGTCAGAAACTTTTCCTCAACTTAGGAAGCTTAAAATAAGAAATTGTCGAATGTTGAAGGAAGAGATGCTTAATCAGGTATTCTTCAGAATCGTTTCTTCTTTGTCATATGTTTCCAAAGTTCGGAAACTACATATAGACACCGGTTTTACAGAAGAGCATACCGAGGCCATGTTTCTTGATGGGGAGACTTTATCAATTTCGGGATGTGAATCTGTGGTGGAGTCTGCATTTAAGGCAATGATGAGCATCAACCATCTAAGTTGCCTCCAACAAATACAGATCTGGAGCAGTAGAAAACTAGAATTCCCCCGGCTACAGCAGCAGAAGTATGATTTGGTAGAGCTACAAATAGACTACAGTTGTGATTCACTAACCTCCTTGTCGTTGGATGTCTTTCCCAATCTCAAGAATCTCGAGATAACAGGGTGTGAGAATCTGGAATCAGTGTCAATGTCAGAGGCACCACACGCTGCTCTTCAACGTCTCTCCATTACTAACTGCGACAAATTAGTTTCATTTGCAGGAGAAGGACTGGCTGCACCCAACTTGACTCATCTCCAGATATATGGTTGCCCAAATATTTGCAGGTTACCAAAGGGTGGTTTGCCGCCTAACTTGAAATCACTTGCATGGGGAATTTGTGAGCAACAAATGAGGGATTTATCATGGATGGCCAACTTGCACGCCCTCACTCATCTCAAAATTTATGGTTATGGGTGTAAGAACATAAAGTCATACCCAGAGGTGGGTTCACTGCCTCACCTTCCCTCCCTTACCACTCTTGAGATGTGCTGGTTCTATAATCTGGAGACATTGGAGTGCAACGAGCTTCTCCGCCTCACCTCCCTTCAACAATTGCACATTTCATGCTGCCACAAGCTGGAGAATATGGAAGGAGAAAAGCTGCCTCCCTCTCTCTTGCTACTTCAAATTGATCAGTGTGGTTTGCTGGGAGAACACTGCAAGAACAAGCATCAACTAATCTGGCCCAAAATTTCCCACATCCCCACCATTCAAGTCAAAAACTTTTCCGATACAGATTCTGAGTAG 3579 0.4124 MAGVLVGGAFLSGFINVVLDRFISGETYNLVVGKKLGSELVRRLRTALLAAEALVADAEQKQFGKQSVRKWLDDLRDAVYKADDLLDRFCIKAATQKQVPTFLPSFLNFENRKIVNEIEEVVRTIEDLERCKESLGLEKISTSSSSWRAPSTSLVRGNVYGREDDQQALIKMLNDNTEHHLSVISIVGIGGVGKTTLAQWVYNNGDLMKEFDLKAWVCISENFDIVEMTRNVIKGILGGAWSLDDFNSLQHVLKEKLSNKKFFIVLDDVWSDDGDKWSYFMTPFQYGKKGSVVLLTTRGKNVALAVQNCRPYFLKGLSEDYCWSVFANNASFPESNGRATLEEIGRKIVKKCDGLPLAAETLGRLLRTKHDVEEWNKILMSDIWGFSMEKSKIIPALLISYFHLPPHLKLCFVYCALFPKDYKFDKNKLILLWKAEEFLPPPKRGESLEEVGCECFDELSSRLFFTKREGFGHYFVMHDLLHDLAIFLAGDFYCNSEELGKEEEIRIQTRHLCVDLSHCSSKLYNSISKVESLRTLLLCGNFSSPNFNIEAATCEILSKCKYLRVLSFDKLXVLPNSTGELIHLRHLDLSYTHIKTLPESLCSLCNLQTLKLCGCYWLTMLPSGLHNLVSLQHLDIRETALEEMPRKMSKLNQLHVLSSFVVGKHEDNGIQELGGLVNLHGPFKIKKLENIVDVKEAKSAKIMDKKHIDELCLEWSLGDDLVSSTETERDILDNLQPHNGLKELKIWGYKGTIFPNWMGHCSYQNMTSVYLESCKNCCMLPSLGQLPSLKSLGIEGLDQLRSIGEEFYKNEGDRHSSHIAPFPSLESLEFDNMACWEVWHVSESETFPQLRKLKIRNCRMLKEEMLNQVFFRIVSSLSYVSKVRKLHIDTGFTEEHTEAMFLDGETLSISGCESVVESAFKAMMSINHLSCLQQIQIWSSRKLEFPRLQQQKYDLVELQIDYSCDSLTSLSLDVFPNLKNLEITGCENLESVSMSEAPHAALQRLSITNCDKLVSFAGEGLAAPNLTHLQIYGCPNICRLPKGGLPPNLKSLAWGICEQQMRDLSWMANLHALTHLKIYGYGCKNIKSYPEVGSLPHLPSLTTLEMCWFYNLETLECNELLRLTSLQQLHISCCHKLENMEGEKLPPSLLLLQIDQCGLLGEHCKNKHQLIWPKISHIPTIQVKNFSDTDSE* 1193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0042 1192 Coils Coil 41 61 - -
Amo12g0042 1192 SUPERFAMILY L domain-like 476 878 - -
Amo12g0042 1192 Gene3D - 17 130 - -
Amo12g0042 1192 Gene3D Ribonuclease Inhibitor 506 678 IPR032675 -
Amo12g0042 1192 Gene3D Ribonuclease Inhibitor 679 876 IPR032675 -
Amo12g0042 1192 Pfam Rx N-terminal domain 39 100 IPR041118 -
Amo12g0042 1192 Coils Coil 111 131 - -
Amo12g0042 1192 Gene3D - 400 486 IPR036388 -
Amo12g0042 1192 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 415 IPR027417 -
Amo12g0042 1192 SMART LRR_typ_2 581 604 IPR003591 -
Amo12g0042 1192 SMART LRR_typ_2 628 651 IPR003591 -
Amo12g0042 1192 Gene3D - 149 310 IPR027417 -
Amo12g0042 1192 SUPERFAMILY L domain-like 930 1175 - -
Amo12g0042 1192 ProSiteProfiles Leucine-rich repeat profile. 583 604 IPR001611 GO:0005515
Amo12g0042 1192 PRINTS Disease resistance protein signature 352 366 - -
Amo12g0042 1192 PRINTS Disease resistance protein signature 183 198 - -
Amo12g0042 1192 PRINTS Disease resistance protein signature 973 989 - -
Amo12g0042 1192 PRINTS Disease resistance protein signature 256 270 - -
Amo12g0042 1192 PANTHER DISEASE RESISTANCE PROTEIN RP 38 915 IPR044974 GO:0006952
Amo12g0042 1192 Pfam NB-ARC domain 163 379 IPR002182 GO:0043531
Amo12g0042 1192 Gene3D Ribonuclease Inhibitor 877 1183 IPR032675 -
Amo12g0042 1192 Gene3D - 316 399 IPR042197 -
Amo12g0042 1192 PANTHER OS05G0414200 PROTEIN 38 915 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0042 Amo-Chr12 664816 669140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0042 184 912 WRKY Transcription Factor Family AT5G45050 23.086 4.45e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0042 - - adu:107472842 1681