Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0034 ATGTCTGTTGATTCAGCTGAGCATAGCATACGAGGTGTAGCCACTCATGGTGGACGCTATGTTCAGTACAACATCTATGGCAACCTCTTTGAGGTTTCTACAAAGTATGTCCCTCCTATTCGCCCTGTTGGAAGAGGTGCTTATGGTATTGTTTGTGCTGCTGTAAATGCCGAGACAGGTGAGGAAGTTGCCATTAAGAAGGTTGGCAATGCATTTGACAACAGAATAGATGCCAAAAGGACCTTAAGAGAAATTAAGCTTCTTCGGCACATGGATCATGAAAATGTGATGTCCATTAAAGATATCATTCGACCTCCACAGAAGGAGAACTTCAATGATGTTTACATTGTTTCTGAGTTAATGGACACAGATCTACATCAAATAATACGTTCCAATCAACCATTGACTGATGATCATTGTCGGTATTTTCTATATCAGTTGTTACGAGGGCTCAAATATGTACATTCGGCGAATGTTTTGCACCGTGATCTAAAGCCTAGTAACTTGCTACTGAATGCCAATTGTGACCTTAAGATTGCAGACTTTGGTCTTGCTAGAACTACCTCTGAAACTGATTTTATGACCGAGTATGTGGTTACTCGATGGTATCGAGCTCCGGAGTTGCTTCTTAACTGTTCTGAATATACAGCAGCTATTGATATATGGTCGGTTGGTTGCATACTCGGTGAAATCATGACAAGGCAGCCCCTCTTTCCGGGGAGAGATTATGTTCATCAGCTGAGACTGATCACAGAGCTGGTAGGTTCACCTGACGATGCCAGCCTCGGATTTCTTCGAAGTGATAATGCTCGTAGATATGTAAAACAGCTTCCACAATGTCCAAAGCAAAATTTTTCTGCTAAATTTCCCAACATTTCTGCTGGTGCCATTGATTTGCTAGAAAAGATGCTCATCTTTGATCCAAGCAAGCGCATTACAGTTGATGAAGCTTTGTGCCATCCTTACATGGCACCACTCCATGATATTAATGAGGAACCTGTTTGTCTAAGACCGTTCAGTTTCGACTTTGAGCAACCGTCATTCACTGAAGAAGACATCAAGGAACTCATCTGGAGAGAATCTTTGAAGTTCAATCCTGATCCACCAATTTACTGA 1116 0.4185 MSVDSAEHSIRGVATHGGRYVQYNIYGNLFEVSTKYVPPIRPVGRGAYGIVCAAVNAETGEEVAIKKVGNAFDNRIDAKRTLREIKLLRHMDHENVMSIKDIIRPPQKENFNDVYIVSELMDTDLHQIIRSNQPLTDDHCRYFLYQLLRGLKYVHSANVLHRDLKPSNLLLNANCDLKIADFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILGEIMTRQPLFPGRDYVHQLRLITELVGSPDDASLGFLRSDNARRYVKQLPQCPKQNFSAKFPNISAGAIDLLEKMLIFDPSKRITVDEALCHPYMAPLHDINEEPVCLRPFSFDFEQPSFTEEDIKELIWRESLKFNPDPPIY* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0034 371 ProSitePatterns MAP kinase signature. 72 175 IPR003527 GO:0004707|GO:0005524|GO:0006468
Amo12g0034 371 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 14 370 - -
Amo12g0034 371 ProSiteProfiles Protein kinase domain profile. 37 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g0034 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Amo12g0034 371 Gene3D Transferase(Phosphotransferase) domain 1 121 350 - -
Amo12g0034 371 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 14 370 - -
Amo12g0034 371 CDD STKc_TEY_MAPK 30 366 - -
Amo12g0034 371 SMART serkin_6 37 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g0034 371 Pfam Protein kinase domain 41 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g0034 371 ProSitePatterns Protein kinases ATP-binding region signature. 43 67 IPR017441 GO:0005524
Amo12g0034 371 Gene3D Phosphorylase Kinase; domain 1 20 360 - -
Amo12g0034 371 SUPERFAMILY Protein kinase-like (PK-like) 40 330 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0034 Amo-Chr12 600760 604309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0034 7 366 MAP Kinase Gene Family AT4G01370 86.944 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Amo12g0034 Pkinase 1e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0034 K20600 - gmx:100779469 710.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0034 12 600760 604309 Amo02g0349 02 4300428 4303480 hybridization