Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0016 ATGGTAGATAACATGGAAGGGGTGGTTGCAAGAATAGAATTTCTTGCAAGTCAAAAAGATATCCTTGGTCTTCAAAAGACTACTAAGGATAATAACTTGTCATCATCATCATCGTCATCATGGCGAGAAACCACATGTCTGATGGAAGGGAACATATATGGCAGGGAGCATGATCAACAAGCTCTAATCAAAACAATAAATGACAACAGTGAATCTCAGTTATCTGTGATTCCTGTTGTTGGCATGGGTGGGGTTGGTAAAACAACCTTAGCCAAATGGGTGTACAGTGTCGTGGAAGGATTTGATCCGAAAGCATGGGTCTGCATCTCTGAAACATTTGATGTTGCTGATATTACAAAGAAAACCATTGAGGACATTACTAAAAATTCTTGTGCCCTTGGGACTTTAAATTCGCTACAAAATAAACTGCAGGAAGTCTTGTCAGCAAAGAAGTTCTTCATTGTTCTAGACGATGTCTGGAGCGATGATGCCCATAAGTGGAAGCAATTTATAACTCCTTTTCACTGTGGGGCTAAGGGTAGTACAATTCTTATTACAACTCGCATTAAAGAAGTTGCTTCAGTCGTTCAGACATGTTCCTCCTACTTTCTTAATGAGTTGTCGCAAGATTCTTGTTGGTTATTGTTTGCAGCCAATGCATGTTTTCCGGAGTCAAATGGGAACCCAATGCTAGAGAATATCGGTAGACAGATTGTCAACAAGTGTAAGGGCTTGCCATTAGCTGTAGAAACACTTGGGCGCTTGTTGCAAGGAGAGGATGATGCTGAAGAATGGAAAGCTATTTTAAGGAGTGCCATCTGGGAATTTCCCATGAAAGATAGTAAAATTATTCCAGCATTGTTAATAAGCTACTTCCACCTACCTTCTTACTTGAAGCGTTGTTTCGTTTATTGTTCCTTGTTTCCCAAAGATCATAAGTTTGAGAAAAATGAACTAGTTTTGCTGTGGATGGCTGAAGATCTTTTAAGGTTACCAAAGAGAGGAGAGAGTTTAGAAGAGGTTGGTTGCAAGTGTTTTGAAGAATTAGCTTCAAGGTTATTTTTTAAACAAGAATGGTGTTTTCATAAGATGCATGATCTCTTGCATGACTTGGCAATATTCCTTGCTGGAGACTTCTATGGTAGAATAGAAGAGCTTGGTGAACAAGAAAAGAAGAAGGCTCTCACTCGTCATTTGTCACATTTCCCACTTGGAAGGTTAAGTAATCCAATCTATTTTTCACAATTTTCACGTCAAAGCTTAGGTCATCTAATCTCAAAAGACTTTAATTCCATTGTGAAATTGAAATCTTTGAGGACATCGTTGTACATCGATGATTTGTTCAGCATGGAAAACAGAGAATCAAAGTTTAAATACTTGAGAGTTTTATCCTTTCATAAACTTGATGTATTACCTGAATCAATGGGTGAATTGATTCATCTACGGTATTTGAATCTCTCTTGGTGTAACATTAATAGGTTGCCGGAATCGTTGTGCAACTTGTATAATCTACAAACATTAATATTGTATGGATGTACTAAGCTGACCATGTTGCCCAGTGGCATGCATAATCTTGTGAATTTACGGCATCTTGATCTTAGGGGAACTTCTTTGGAAGAAATGCCTGGAGGAATAAGCAAATTGAAACACTTGCGTGTTTTATATTTCTTTATTGTGGGAAAGCATGAATATAATGGAATCCAGGAATTAGGAGGGCTCTCAAATCTTCAAGGTTCATTTTGGATTAGGAAGTTAGAGAATATTGTGGACGTGAAAGAAGCAGAGAATGCAAGAATGATAAACAAGAATCTCATCAGCAAATTATTCTTGGAGTGGTCTTCAGGTGGTGATATGGTTTCAGATACACAAACTGAAAGAGAGATACTCCACAGCTTAGAACCGCACAATGGCTTGAAAGAGTTGAGAATAAGGGGATACAGGGGTACAAGGTTTGCAGATTGGTTAGGGCATTCTTCCTACAGCAATATGACACATGTATCGTTGGAGTGTTGCATGAACTGTTGCATGCTGCCTTCACTTGGACAGCTACCATCTCTTAAGGACCTGCACATTCAAGATTTCGGTCAGCTCAGAAGCATTGGAATTGAGTTTTACAAGAATGAAGGCAATCCTACAGCATTGCATATTGCTCCTCCTTTTCCCTTGTTGGAGAGTTTGAAATTTGATAAAATGGCATGTTGGGAGGAGTGGCACTTACCTGACTCAAAAGCTTTTCCTCAGCTTAAGACTCTTCAAATAATAGATTGTCCAATGTTAAAGGGAGATATGCTCAATCATGTATTAGTGAGAATTGTTTCTTCCTCAATGGATGTTTCAGAAGTTCGCAAACTGGAAATAAGACAAGATGACAAAGGAAGGTTTCTACAGATGCTATTCTCGGCGGATATTTTATCATTTAGCGGTTGTGAATCTATGGTGGAGTCTGCAATTAAGGCAATGATGAGCATCAACCATCTAAGTTGCCTCCAAGAAATAGAAATCTCAGAGTGTTCATCACTGATCTCGTTTTCGTTGGATGCCTTTCCCAGTCTCAAAGTTCTCGAGATAAAAGGGTGTTTAAATCTGGAATCAGTGTCAATGTCAGAGCCACCACCTAAATCTCTGCAAAATCTGAGAATCTTGCATTGCAGACAACTGGAATTTCTTCAACAACAACAGCAGAAGTATGATTTGGTAGAGCTACAAATAGATTCCAGCTGTGATTCACTGACCTCCTTGTCATTGGATGTCTTTCCCAATCTCAAGAATCTCAAGATATATAATTGTAGGAACCTGGAATCAGTGTCAATGTCAGAGGCACCACACGCTGCTCTTAAAGAAGTCACCATCTTTAGGTGCTCGAAATTAGTGTCATTTGCAGGAGAAGGATTGGCTGCACCCAACTTGACTCATCTTACTATCTCTAGTTGCGACAAATTAGTGTCATTTGCAGGAGAAGGACTGGCTGCACCCAACTTGACTCATCTTACTATATGCTGCCCTGAATTAGTGTCATTTGCAGGAGAAGGACTGGCTGCACCCAACTTGACTCATCTGGAGATAAGTCATTGCAGAAAACTGGAATTTCTTCAACAACAACAGCAGAAATATGATTTGGTAGAGCTACAAATACAAGACAGGTGTGATTCACTGACCTCCTTGTCGTTGGATGTCTTTCCCAATCTCAAGAATCTCGAGATAAGAGAATGTAGGAATCTGGAATCAGTGTCAACGTCAGAGGCACCACTTGCTGCTCTTCAACGTGTCATCATCTATGAATGCCCTGAATTAGTGTCATTTGCAGGAGAAGGACTGGCTGCACCTAACTTGACTCATCTTCAAGTCACAAATTGCTCAAAGTTGGAGGCATTACCACGTGACATGAAGAGTCTACTCCCAAGTTTACACTCTCTCCAGATAGAGGGTTGCCCAAACATTTGCAGGTTGCCAGAGGGTGGTTTGCCGCCTAACTTGAAAGAGCTTCATGTGGAAATTGGCGAGCAACAAATGAGGGATCTATCATGGATGGGCAACTTGCACGCCCTCACTCATCTTACCATTTATGGTGATTACTGCAACAACATAAAGTCATACCCAGAGGTGGGTTCGCTGCCTCACCTTCCCTCCCTTACCACTCTTGTGATATACCGGTTCGATAATCTGGAGACATTGGAGTGCAACGAGCTTCTCCGCCTCACCTCCCTTCAACAACTACACATTTCATTCTGCAACAAGCTGGAGAATATGGAAGGAGAAAAGCTGCCTCCCTCTCTCTTGCGACTTGAACTTTATTATTGTGGTTTGCTGGGAGAACACTGCGAGAACAAGCATCAACTAATCTGGCCCAAAATTTCCCACATCCCCACCATTGAAGCCGAAAACTTCTCCGATACAGATTCTGAGTAG 3906 0.4071 MVDNMEGVVARIEFLASQKDILGLQKTTKDNNLSSSSSSSWRETTCLMEGNIYGREHDQQALIKTINDNSESQLSVIPVVGMGGVGKTTLAKWVYSVVEGFDPKAWVCISETFDVADITKKTIEDITKNSCALGTLNSLQNKLQEVLSAKKFFIVLDDVWSDDAHKWKQFITPFHCGAKGSTILITTRIKEVASVVQTCSSYFLNELSQDSCWLLFAANACFPESNGNPMLENIGRQIVNKCKGLPLAVETLGRLLQGEDDAEEWKAILRSAIWEFPMKDSKIIPALLISYFHLPSYLKRCFVYCSLFPKDHKFEKNELVLLWMAEDLLRLPKRGESLEEVGCKCFEELASRLFFKQEWCFHKMHDLLHDLAIFLAGDFYGRIEELGEQEKKKALTRHLSHFPLGRLSNPIYFSQFSRQSLGHLISKDFNSIVKLKSLRTSLYIDDLFSMENRESKFKYLRVLSFHKLDVLPESMGELIHLRYLNLSWCNINRLPESLCNLYNLQTLILYGCTKLTMLPSGMHNLVNLRHLDLRGTSLEEMPGGISKLKHLRVLYFFIVGKHEYNGIQELGGLSNLQGSFWIRKLENIVDVKEAENARMINKNLISKLFLEWSSGGDMVSDTQTEREILHSLEPHNGLKELRIRGYRGTRFADWLGHSSYSNMTHVSLECCMNCCMLPSLGQLPSLKDLHIQDFGQLRSIGIEFYKNEGNPTALHIAPPFPLLESLKFDKMACWEEWHLPDSKAFPQLKTLQIIDCPMLKGDMLNHVLVRIVSSSMDVSEVRKLEIRQDDKGRFLQMLFSADILSFSGCESMVESAIKAMMSINHLSCLQEIEISECSSLISFSLDAFPSLKVLEIKGCLNLESVSMSEPPPKSLQNLRILHCRQLEFLQQQQQKYDLVELQIDSSCDSLTSLSLDVFPNLKNLKIYNCRNLESVSMSEAPHAALKEVTIFRCSKLVSFAGEGLAAPNLTHLTISSCDKLVSFAGEGLAAPNLTHLTICCPELVSFAGEGLAAPNLTHLEISHCRKLEFLQQQQQKYDLVELQIQDRCDSLTSLSLDVFPNLKNLEIRECRNLESVSTSEAPLAALQRVIIYECPELVSFAGEGLAAPNLTHLQVTNCSKLEALPRDMKSLLPSLHSLQIEGCPNICRLPEGGLPPNLKELHVEIGEQQMRDLSWMGNLHALTHLTIYGDYCNNIKSYPEVGSLPHLPSLTTLVIYRFDNLETLECNELLRLTSLQQLHISFCNKLENMEGEKLPPSLLRLELYYCGLLGEHCENKHQLIWPKISHIPTIEAENFSDTDSE* 1302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0016 1301 SMART LRR_typ_2 525 548 IPR003591 -
Amo12g0016 1301 SMART LRR_typ_2 478 501 IPR003591 -
Amo12g0016 1301 PANTHER DISEASE RESISTANCE PROTEIN RP 4 843 IPR044974 GO:0006952
Amo12g0016 1301 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 305 IPR027417 -
Amo12g0016 1301 Gene3D Ribonuclease Inhibitor 1132 1281 IPR032675 -
Amo12g0016 1301 Gene3D Ribonuclease Inhibitor 1037 1131 IPR032675 -
Amo12g0016 1301 Gene3D Ribonuclease Inhibitor 897 983 IPR032675 -
Amo12g0016 1301 Gene3D Ribonuclease Inhibitor 793 896 IPR032675 -
Amo12g0016 1301 Pfam NB-ARC domain 56 270 IPR002182 GO:0043531
Amo12g0016 1301 Coils Coil 582 602 - -
Amo12g0016 1301 Gene3D - 206 289 IPR042197 -
Amo12g0016 1301 Gene3D Ribonuclease Inhibitor 419 788 IPR032675 -
Amo12g0016 1301 PANTHER OS05G0414200 PROTEIN 4 843 - -
Amo12g0016 1301 Gene3D - 290 373 IPR036388 -
Amo12g0016 1301 SUPERFAMILY L domain-like 903 1285 - -
Amo12g0016 1301 Gene3D - 38 202 IPR027417 -
Amo12g0016 1301 PRINTS Disease resistance protein signature 242 256 - -
Amo12g0016 1301 PRINTS Disease resistance protein signature 146 160 - -
Amo12g0016 1301 PRINTS Disease resistance protein signature 76 91 - -
Amo12g0016 1301 PRINTS Disease resistance protein signature 824 840 - -
Amo12g0016 1301 SUPERFAMILY L domain-like 423 888 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0016 Amo-Chr12 349196 353101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0016 77 264 WRKY Transcription Factor Family AT5G45050 28.718 3.07e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0016 - - ahf:112726314 1478.77