Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0015 ATGGCTGGAGTTCTTGTTGGTGGAGCTTTTCTGTCTGGCTTCATTAATGTTGTCTTGGACAGGCTCATTTCTGCTGATGCTGTCAACTTGGTTGCGGGCAAGAAGCTTAGCTCTGACTTGGTTGAGAGGCTGAGGAATGCTCTCATGGATGCTGGAGCTCTTGTTGATGATGCAGAGCTCAAGCAACTGGATAACCATGATGTGAAGGAGTGGCTCAACTGTCTCCGAGATGCTCTTTACACTGCTGATGACTTGCTGGACCGCATCTGCACCAAAGCTGCAACTCAAAAGGTCACTCTCTTGGGTAGAATCTTCAATTCTGAAGATAGGCAGATGGTGAATGAGATAGAAAGGGTGGTTAGAAGGATAGAAGATCTTGAGAAACGCAAAGGAAAGCTTGGGCTTGAAAAGATTTCCACTGCTAGCTTCTCCTGGAAAACTCCATCCACTTCTCTTGTAAAAGGGGATGTGTATGGCAGGGAGGATGACCAGAAGGCCTTAATCAAGATGCTGAATGACAACAATGAGAATCACCTGTCTGTGATCTCTATTGTTGGCATGGGTGGTGTTGGTAAAACTACTTTGGCTCAATGGATGTACAATAATGCAGAGTTGATGGTGGGATTTGATCGGAAAGCATGGGTTTGCGTTTCGGAAAACTTCAATATTGTTGAGACTACAAAGAATATTGTAAAAGAGATCTCTACAAATACTCAGGATCTTGATAGCTTCAATTCAATTCAAGATGCTTTGAAGAAAGAATTGTCTGAAAAGAAGTTCTTTGTTGTTTTGGATGATGTTTGGAGTAATGATCATCATCAATGGAAGGATTTTCTAGCCCCTTTTCAATATGGGGTTAAGGGAAGTACTATTCTTCTAACTACTCGCAAGGAAGATGTTGGTTCAGTTGTCCAAACAAATTACCACCCTCACTATCTCAATCCATTATCAGAAGACTATTGCTGGTCGGTGTTTGCTGCCAATGCTTCTTTTCCAGAATCAAATGGGAGCCCAACACTAGAAGGAATAGGCAAAAGGATTGCGAGGAAGTGTGACGGTTTGCCATTAGCAGCAGAAACACTTGGTTGCTTGTGCAGAAGGCATGATGCTGAGGAATGGGAAAAAATCTTAAGGAGTGAAATTTGGAGATTTTCTACAAATGATAGTAAGATTATTCCAGCATTGTTAATTAGTTACTTTCACCTTCCTGCACATTTGAAGCCTTGTTTTGTTTATTGTGCACTGTTTCCGAAAGATTATCCTTTCGGTAAAGATGAATTAATTTTGCTGTGGATGGCCGAAGATCTTTTAAGGCTACCAAATAGAGGAGAGAGTTTTGAAGAAGTTGGTTGCAAATATTTTGAAGAATTAGCTTCCAGATTGTTTTTTAAACCAAGTAAGTATTATTTTAAGAGATTTGTGATGCATGATCTCTTGCATGACTTGGCAATATTCCTTGCTGGAGATTTCTATTATAGAATAGAAGAGCTTGGTGGCAAGATCAAACATGAACTTTCCATTGATTGCAATGATGAAGGTGCTAATTTTGTAGTATCCAAAGTAAAGTGTCATCTTTCTGTGTTTCTAAGCCACCCCAATTTGACCCTTTTGCACAAGTTCCTTCCTAGTGATGAACTTGTTTCTAAAGAATCAAACTTTGGAACCTATGTCACCAACATCCAAGTGAATATGTTTCAATGTGGTGGAATTGCCATTGGAACATGCATTTCACATAGGATTATAGATGGTGCTGCATTAGCCACATTCCTAAAGTGTTGGAGTGAAAGGGCTAGAGGCTGCAAACACTTGACACAACCAAAGTTCATAGCATCTTCTCTTTTTCCCACAAATAGTTTATGGCTTAGAGACTTATCAATGGGAATGTGGGGTTCCTTGTTCAGGCAAGGAAAGTGTGTAACAAAGAGGTTCTTGTTCACAAACAAAGCTATATCCACCCTCAAGGCTCAAATGTCTGCAAAATATTGCTATGATGCAGCGCAAGATCCACCTACGCGGTTGGAGACTGTTTCTGCAATCTTGTGGAAGTGTCTCGTGGCAGCATCCCAATCGCGGTTTGAAGTGCAAAGGTCTTCTTTTGTGACTCATTTGGTGAACTTGCGGCGGAGAATGGATGAAGCTCTATGTCCTGATCACACCATGGGCAACCTAGTTTGGTTAGTTTCSGCTAAGCATTTCGACGAACACGGGAYGAGCATGGATGACTTGGCGTGTAARCTAAGGAACACAATATCAAGAATCGATAAGGATTTTGTCRAYRAATTGCGAAGCGAAAAAGGGATCTCRATCATGAAAGATTCGCTTAGGRAAATATGTGAGTTAAGATCAAGGAATGAAATGGAACATTTTGGGTTTAGTAGTTGGTGCAATCTTGGATTCTATGAAGCTGATTTTGGGTGGGGAAAACCAACATGGGTGAGTAGTGTTGCATCAAATGGTCCTATGTTCATGAATCTCATCATTTTGGTTGATACAAAGTTAAGAGATGGCATTGAAGCTTGGGTTACATTGGATGAAAATGACATGAATCATTTGATTTCAAACACTGAAATCCTCAATTATGCAACTTTGGATCCAAGTCCTTTAGACCAAAGTTATTAA 2619 0.4036 MAGVLVGGAFLSGFINVVLDRLISADAVNLVAGKKLSSDLVERLRNALMDAGALVDDAELKQLDNHDVKEWLNCLRDALYTADDLLDRICTKAATQKVTLLGRIFNSEDRQMVNEIERVVRRIEDLEKRKGKLGLEKISTASFSWKTPSTSLVKGDVYGREDDQKALIKMLNDNNENHLSVISIVGMGGVGKTTLAQWMYNNAELMVGFDRKAWVCVSENFNIVETTKNIVKEISTNTQDLDSFNSIQDALKKELSEKKFFVVLDDVWSNDHHQWKDFLAPFQYGVKGSTILLTTRKEDVGSVVQTNYHPHYLNPLSEDYCWSVFAANASFPESNGSPTLEGIGKRIARKCDGLPLAAETLGCLCRRHDAEEWEKILRSEIWRFSTNDSKIIPALLISYFHLPAHLKPCFVYCALFPKDYPFGKDELILLWMAEDLLRLPNRGESFEEVGCKYFEELASRLFFKPSKYYFKRFVMHDLLHDLAIFLAGDFYYRIEELGGKIKHELSIDCNDEGANFVVSKVKCHLSVFLSHPNLTLLHKFLPSDELVSKESNFGTYVTNIQVNMFQCGGIAIGTCISHRIIDGAALATFLKCWSERARGCKHLTQPKFIASSLFPTNSLWLRDLSMGMWGSLFRQGKCVTKRFLFTNKAISTLKAQMSAKYCYDAAQDPPTRLETVSAILWKCLVAASQSRFEVQRSSFVTHLVNLRRRMDEALCPDHTMGNLVWLVSAKHFDEHGXSMDDLACKLRNTISRIDKDFVBXLRSEKGISIMKDSLRXICELRSRNEMEHFGFSSWCNLGFYEADFGWGKPTWVSSVASNGPMFMNLIILVDTKLRDGIEAWVTLDENDMNHLISNTEILNYATLDPSPLDQSY* 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0015 872 Gene3D - 636 860 IPR023213 -
Amo12g0015 872 PANTHER VINORINE SYNTHASE-LIKE 497 870 - -
Amo12g0015 872 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 413 IPR027417 -
Amo12g0015 872 Coils Coil 41 61 - -
Amo12g0015 872 Coils Coil 109 136 - -
Amo12g0015 872 Gene3D - 460 620 IPR023213 -
Amo12g0015 872 PRINTS Disease resistance protein signature 254 268 - -
Amo12g0015 872 PRINTS Disease resistance protein signature 351 365 - -
Amo12g0015 872 PRINTS Disease resistance protein signature 181 196 - -
Amo12g0015 872 Pfam Rx N-terminal domain 20 107 IPR041118 -
Amo12g0015 872 Pfam Transferase family 461 856 - -
Amo12g0015 872 Gene3D - 15 131 - -
Amo12g0015 872 Pfam NB-ARC domain 161 378 IPR002182 GO:0043531
Amo12g0015 872 PANTHER F21J9.9 497 870 - -
Amo12g0015 872 Gene3D - 146 309 IPR027417 -
Amo12g0015 872 Gene3D - 315 402 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0015 Amo-Chr12 324966 344001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0015 458 836 Monolignol Biosynthesis Gene Families AT5G48930 23.308 7.42e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0015 - - ahf:112732334 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0015 12 324966 344001 Amo02g0389 02 4814178 4817031 hybridization