Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0013 ATGGCTGCTGTTAGGTTTTCCCATTTAAAACGCCTCCAGAGTTCAATCAAGGGTTCTCTGAATGTTGAACTGTGTCACAATAGTGTGGATATGAATCTTGCAAGAAGTGCAAGGTTGCCTAGTGATTCACTTAGCAATGTTTATTACAAAAGGGAGTTACAGTCACCTCGAATTTTCACTAAGAATCAGTTTAGTAGTATTCCTTCTGAATGTCATGCTAGTAGTTCCCCTGTTATTACCAAACACAATGCATTAGTTTATCCTGGGATGTTGCCTAGCTTTCGAATCCGGGGTGCTCTTCCTTTTGCTTCAATGAGCCCCATGTTGAATTGCCGGACATATTCGTCGGTTTTGGGTGGCAAAGGTAGCAGGGATCATAATGGCACAGAAGTTGCTGCTGGTGCTGGTGATGTGAATGCCGGTGATGATTCTGTTGTTGCTGGTGATCTAGCTGAGAAGATGAAAGATACATGGAAGAGTGTGGTAGAGACAGCAACACATGCTGGAGAAAAGGTTAAAGAAGCCTCGGATGAGCTGACTCCATATGCTCAACAGTTGCTTGATTCACATCCGTATCTTAACAAGGTGGTTATTCCAGTTGGTAGTACATTAACTGCTACTCTAGTAGCTTGGTTTTTGATGCCTTGGATTTTGAGGAAATTTCACAAATATGCAATGAAAGGTCCAATTTCTCTAATACCTGGAAGCACATCATGGGAACAAGTTGCTTATGAGAAAAGCTTTTGGGGTGCTATGGAAGACCCAGTGCGATATTTAGTTACCTTCATCACATTATCACAGATTGGTGCAATGGTAGCTCCAACAACTATAACTTCACAATATCTTGTGCCGGCTTGGAGGGGCGCAGCGATTATTTCATTTGTATGGTTTTTGCATAGATGGAAGACAAATGTGTTTCATCGTACCCTGTCCAATCAAGGTTTACTTGGACTTGACAAGGAGAAATTGCTCACTCTAGATAGAATTTCATCTGTTGGTCTGTTTGTGATTGGTATAATGGCTTTGGCTGAGGCTTGTGGTGTGGCTGTGCAATCTATTGTAACTGTTGGTGGTATCGGAGGAGTTGCTACTGCTTTTGCCGCAAGAGATATCCTTGGCAATGTTTTCAGTGGTTTATCTATGCAGTTTTCCAGGCCCTTTTCAATAGGAGATACAATAAAAGCTGGCTCAGTTGAGGGTCAAGTGGTGGAAATGGGCCTTACTACAACATCGTTGCTGAGTACTGAGAAGTTTCCAGTCATAGTGCCGAATTCCTTTTTTTCTAGCCAGGTTATAGTGAACAAATCTCGTGCTGAGTGTCGTGGCATCATCAGCAAAATCCCTCTGCAAATTGAGGATTTAAGTAAGATTCCCCAGTTATCTGAGGATATAAAAAGCATGCTAAGATCACATGCAAAGGTGTTCTTGGGAAAAGAGGTTCCTTACTGTTTCTTGTCAAGAGTGGAAAGTTCATATGCAGAATTGACTATTGGATACAACCTCAAACACATGCGCAAAGATGAGTTATTTGCTGCAGAACAAGACGTTCTCCTGCATGCAGTTCAGGTCATTAAGAATCATGGGATAGCTCTTGGCAGCACATTGCCAGGTTGA 1614 0.4219 MAAVRFSHLKRLQSSIKGSLNVELCHNSVDMNLARSARLPSDSLSNVYYKRELQSPRIFTKNQFSSIPSECHASSSPVITKHNALVYPGMLPSFRIRGALPFASMSPMLNCRTYSSVLGGKGSRDHNGTEVAAGAGDVNAGDDSVVAGDLAEKMKDTWKSVVETATHAGEKVKEASDELTPYAQQLLDSHPYLNKVVIPVGSTLTATLVAWFLMPWILRKFHKYAMKGPISLIPGSTSWEQVAYEKSFWGAMEDPVRYLVTFITLSQIGAMVAPTTITSQYLVPAWRGAAIISFVWFLHRWKTNVFHRTLSNQGLLGLDKEKLLTLDRISSVGLFVIGIMALAEACGVAVQSIVTVGGIGGVATAFAARDILGNVFSGLSMQFSRPFSIGDTIKAGSVEGQVVEMGLTTTSLLSTEKFPVIVPNSFFSSQVIVNKSRAECRGIISKIPLQIEDLSKIPQLSEDIKSMLRSHAKVFLGKEVPYCFLSRVESSYAELTIGYNLKHMRKDELFAAEQDVLLHAVQVIKNHGIALGSTLPG* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0013 537 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 284 369 IPR011014 GO:0016020
Amo12g0013 537 Pfam Mechanosensitive ion channel 329 530 IPR006685 GO:0016020|GO:0055085
Amo12g0013 537 Gene3D - 285 385 - -
Amo12g0013 537 Gene3D - 386 434 IPR023408 -
Amo12g0013 537 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 115 534 - -
Amo12g0013 537 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 115 534 - -
Amo12g0013 537 SUPERFAMILY Sm-like ribonucleoproteins 370 435 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0013 Amo-Chr12 300591 304230 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0013 152 534 Mechanosensitive Ion Channel Family AT4G00290 67.624 0.0 545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0013 K22047 - gmx:100814954 744.962