Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0007 ATGAACCAGCTTCCCCAACCCGAGCGCCACCGCAGTGACAAATACTCTCCCACTGCTCTTGCCGTCACCGCCGTCGCCACCAACCTCACCAGCAAGCGGATCCTTCAAAAGGACGGCCCCACCCCCGTCGGACCCATAAGGTACCGGGGTGTGAGGCGGAGGCCATGGGGACGTTATGCCGCTGAGATAAGGGACCCTCAAACTAAGGAGCGGCGTTGGCTGGGGACATATGACACTGCGGAGGAAGCCGCCCAAGCCTACGACTCCGCCGCCAGAGTCTTGCGTGGCCCCACTGCGAGAACCAACTTTGTGTATTATATTTCCCCTCCTCAACCTTCTTTAATCTTCGTCACCAACAAAAACAACAATAAAAACATCCTTAACCGCAGTAGCCACTTATTGGGAAGTCAGTTCAGCTTCCCCATCCATCCTAACCAACTCTTCAACAGCCGTAACCGCCACTTGGGTGGTTCTTGGCCTGACCCCTTCTCCTTCTACTCCGCCCCTTCTTCATTTTCTACCTTCCAGCAACAGCGAAACCAGCAGCTTAACTCCACAAACATGCTCCTCCCCGGTGACTTCATAGCCCCTTCTGTTTCATCTTCCTTTAGCCAGCATTTATCCAACCCCAAGGGCAGTTTGGTCAACTCATCACATGGTGTCCATGTTAACCCTTCTCCTTCATCTTCATTTAGTCACCATTCATCCTACCCCAGAGGCAGTATCAACTCATCACATGGTGGCAATGCTAATCCTTCTCTTCCATCTTCCCTTAGCCAGCCTTTATCATACCCCAAGGGCAATTTAGTCAACTCATCACATGGTGGCAGTGCTAACCCTTCTGTTTCATCTTCCTTTAGCCACCATTTATCATACCCCAAGGGCAGTTTAGTCAACTCATCACATGGTGGCAATGCTAATAACCCTTCTCTTTCATCTTCCTTATCCTACCCCAAGGGCAATTTAGTCAACTCATCACATGGTAGCAATGCTCCTAACTACACCGCACGCTTTTCTTCCTCTTGCCTGACAAACACAAACAGTCTCGGTTGTGGCAGTGATAATAATCATAAAGCTGATGGCAGTGAATACTCGCAAGAGCTCTTTCATCACTCAGACTCATCATCCGGGTTGTTGGAAGACATGGTTAGCGGTTTCTTGAAAAGTCCAAAGCCCACTAAAAGTGAGTGTCTGTTGTTAGGTGCTCCTGCTTCTCCATCACAAGATTCTTCCCACCTTAAGGCTGAGTCATTTCCTCCTCTTTCCGCTGTTTCCACAGGCCAGATGACGAAGAAAGACGAGGATTTTAATGTTCCTTTGTATCAAGATGGTTTCCACATGCCGCAACCTGGTCTAAGTTTCGGAACTCACTTTAATTTGTACTCTGCTACCTCTCCTGCTATATATATGGATAATGGATGA 1422 0.4895 MNQLPQPERHRSDKYSPTALAVTAVATNLTSKRILQKDGPTPVGPIRYRGVRRRPWGRYAAEIRDPQTKERRWLGTYDTAEEAAQAYDSAARVLRGPTARTNFVYYISPPQPSLIFVTNKNNNKNILNRSSHLLGSQFSFPIHPNQLFNSRNRHLGGSWPDPFSFYSAPSSFSTFQQQRNQQLNSTNMLLPGDFIAPSVSSSFSQHLSNPKGSLVNSSHGVHVNPSPSSSFSHHSSYPRGSINSSHGGNANPSLPSSLSQPLSYPKGNLVNSSHGGSANPSVSSSFSHHLSYPKGSLVNSSHGGNANNPSLSSSLSYPKGNLVNSSHGSNAPNYTARFSSSCLTNTNSLGCGSDNNHKADGSEYSQELFHHSDSSSGLLEDMVSGFLKSPKPTKSECLLLGAPASPSQDSSHLKAESFPPLSAVSTGQMTKKDEDFNVPLYQDGFHMPQPGLSFGTHFNLYSATSPAIYMDNG* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0007 473 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 18 274 - -
Amo12g0007 473 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 279 413 - -
Amo12g0007 473 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Amo12g0007 473 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Amo12g0007 473 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 279 413 - -
Amo12g0007 473 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 18 274 - -
Amo12g0007 473 Gene3D AP2/ERF domain 46 105 IPR036955 GO:0003700|GO:0006355
Amo12g0007 473 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Amo12g0007 473 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Amo12g0007 473 MobiDBLite consensus disorder prediction 206 286 - -
Amo12g0007 473 SUPERFAMILY DNA-binding domain 47 105 IPR016177 GO:0003677
Amo12g0007 473 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Amo12g0007 473 Pfam AP2 domain 47 96 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0007 Amo-Chr12 227352 229255 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0007 46 114 AP2-EREBP Transcription Factor Family AT1G24590 79.710 9.66e-31 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo12g0007 AP2 1.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0007 - - adu:107472834 697.582