Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0005 ATGCGCCTCCACGCCATGGACCAGCTTCCCCAACCCGAGCGCCACCGCAGCGACAAATGCACTTCCACTGCTCTTGCCGCCACCGCCACCGCCACCGCCACCGCCACCAGACTCACCAGCAAGCGGATCCTTCAAAAGGACGGCCCAACCCCCGCCAGAACCATGAGGTACCGGGGTGTGAGGCGGAGGCCATGGGGACGTTATGCCGCTGAGATAAGGGACCCTCAAACTAAGGAGCGGCGTTGGTTGGGGACATATGACACGGCGGAGGAAGCCGCCCGCGCCTACGACACCGCCGCCAGAGTCTTGCGTGGCCCCAATGCGAGAACCAATTTTTTGTACTATACTTTCCCTCCTCAACCTTTTTCCATCTCCGTCACCAACAAAAATAACCATAAAGACATCCTTAACCGCAGTAGCCACCTCTTGGGAAGCCAGTTCAGCTTCCCCATCCATCCTAACCAACTCTTCAACTGCCGTAACCGCCACTTGGGTGGTTTTTGGCCTGACCCCTTCTCCTTCTACTCCGCCCCTTCTTCATTTTCTACCTTCCAGCAACAGCGAAACCAGCAGCTTAACTCCACAAACATGCTCCTCCCCGGTGACTTCATAGCCCCTTCTGTTTCATCTTCCTTTAGCCAGCATTTATCCAACCCCAAGGGCAGTTTGGTCAACTCATCACATGGTGTCCATGTTAACCCTTCTCCTTCATCTTCATTTAGTCACCATTCATCCTACCCCAGAGGCAGTATCAACTCATCACATGGTGGCAATGCTAATCCTTCTCTTCCATCTTCCCTTAGCCAGCCTTTATCATACCCCAAGGGCAATTTAGTCAACTCATCACATGGTGGCAGTGCTAACCCTTCTGTTTCATCTTCCTTTAGCCACCATTTATCATACCCCAAGGGCAGTTTAGTCAACTCATCACATGGTGGCAATGCTAATAACCCTTCTCTTTCATCTTCCTTATCCTACCCCAAGGGCAATTTAGTCAACTCATCACATGGTAGCAATGCTCCTAACTACACCGCACGCTTTTCTTCCTCTTGCCTGACAAACACAAACAGTCTCGGTTGTGGCAGTGATAATAATCATAAAGCTGATGGCAGTGAATACTCGCAAGAGCTCTTTCATCACTCAGACTCATCATCCGGGTTGTTGGAAGACATGGTTAGCGGTTTCTTGAAAAGTCCAAAGCCCACTAAAAGTGAGTGTCTGTTGTTAGGTGCTCCTGCTTCTCCATCACAAGATTCTTCCCACCTTAAGGCTGAGTCATTTCCTCCTCTTTCCGCTGTTTCCACAGGCCAGATGACGAAGAAAGACGACGATTTTAATGTTCCTTTGTATCAAGATGGTTTCCACATGCAGCAACTTGGAGAAGAAGATAAAGAAGAAGAAGAAGGACAACACCAACAACAACAACAACACAACAACAACAATAATAATAATAATAATAATAATCTTGAAGAGTGGCCTATCATGGAAGACATTTTTTATCAGTACCCGGACTTTCTTAATTAG 1524 0.4869 MRLHAMDQLPQPERHRSDKCTSTALAATATATATATRLTSKRILQKDGPTPARTMRYRGVRRRPWGRYAAEIRDPQTKERRWLGTYDTAEEAARAYDTAARVLRGPNARTNFLYYTFPPQPFSISVTNKNNHKDILNRSSHLLGSQFSFPIHPNQLFNCRNRHLGGFWPDPFSFYSAPSSFSTFQQQRNQQLNSTNMLLPGDFIAPSVSSSFSQHLSNPKGSLVNSSHGVHVNPSPSSSFSHHSSYPRGSINSSHGGNANPSLPSSLSQPLSYPKGNLVNSSHGGSANPSVSSSFSHHLSYPKGSLVNSSHGGNANNPSLSSSLSYPKGNLVNSSHGSNAPNYTARFSSSCLTNTNSLGCGSDNNHKADGSEYSQELFHHSDSSSGLLEDMVSGFLKSPKPTKSECLLLGAPASPSQDSSHLKAESFPPLSAVSTGQMTKKDDDFNVPLYQDGFHMQQLGEEDKEEEEGQHQQQQQHNNNNNNNNNNNLEEWPIMEDIFYQYPDFLN* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0005 507 MobiDBLite consensus disorder prediction 1 20 - -
Amo12g0005 507 SUPERFAMILY DNA-binding domain 56 113 IPR016177 GO:0003677
Amo12g0005 507 SMART rav1_2 56 119 IPR001471 GO:0003700|GO:0006355
Amo12g0005 507 MobiDBLite consensus disorder prediction 473 489 - -
Amo12g0005 507 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700|GO:0006355
Amo12g0005 507 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Amo12g0005 507 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 288 507 - -
Amo12g0005 507 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 12 286 - -
Amo12g0005 507 MobiDBLite consensus disorder prediction 215 295 - -
Amo12g0005 507 ProSiteProfiles AP2/ERF domain profile. 56 113 IPR001471 GO:0003700|GO:0006355
Amo12g0005 507 Pfam AP2 domain 56 105 IPR001471 GO:0003700|GO:0006355
Amo12g0005 507 Gene3D AP2/ERF domain 55 114 IPR036955 GO:0003700|GO:0006355
Amo12g0005 507 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 288 507 - -
Amo12g0005 507 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 12 286 - -
Amo12g0005 507 MobiDBLite consensus disorder prediction 460 489 - -
Amo12g0005 507 CDD AP2 56 112 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0005 Amo-Chr12 146167 147901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0005 54 150 AP2-EREBP Transcription Factor Family AT1G24590 57.547 5.48e-30 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Amo12g0005 AP2 1.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0005 - - adu:107472834 776.548