Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2875 ATGAAAATGAAGTCCCTCTTATATCCGACCCTGTTGTCATTGCTGCATTGGCACGTGGCGGTGGTATCAGCTGCAAGGCTGAACATGGCTAGCGATGAATCGGCCTTGGTTGCCATGAGGGAGCATTTTAACTCCTTGGATCCCAACAATGTGCTCGCAAGCAACTGGTCTAGCAGTACCTCTGTTTGCAACTGGATTGGCGTCACCTGCGGCTCTTCCCACCGCAGAGTAACTGCCTTGAATCTCTCATACATGTCTCTTGATGCCACCATCCCTCCGCATCTTGGAAACCTGTCATTCCTTTCTGGCCTGCATCTTCCCAACAATAGCTTCCACGGTAATCTACCTGCTGAACTTGCTGGATTACGTAGACTGAGCATCATCAACCTTAGATTCAACAAATTCACCGGAAGTATCCCCTCCTGGTTTGAATCTCTACGGAAACTAAAACACCTGTTATTGGCAGGCAATAGTTTCACTGGCACAGTCCCACACTTCCTGTTCAACATGAGTTCCCTGCAATCGCTTGAACTTTTTAAAAACAAGTTTTGGGGTCCCTTACCTTCCAACATTTTCTTGTCTCCTTCTTTGCAATATCTGTATCTTACTTACAACCAAATTTCAGGAGCTATCCCTTCAGCTATCATCAACAGTTCGTTTCTGCAGGTTATTGACCTCGACTACAACAACCTATCCGGACAACTGCCGGAGCGCATCTTCCACCATCTACCAAACTTGAAAGAGCTTCACGTGACTAGTAATGCCTTATCCGGTGAAAAATTGCTGAGTGGGGATGACTCCATCACTCAAACCATGAATCTAGCCACAATAGGCTATATGGCCCCTGAATATGGACTTGAGGGAAGAGTGTCTAGGCAAGGTGATGTGTATAGCTATGGAATTTTACTTATGGAGACCTTCACACAGAAAAAACCCACTGACGAAATGTTTGTGGGAGAGTTTACCATCAAAGAGTGGGTGAAAATGTCATGCCCTGATTCACTACTTGATATCGTTGATGCAAAATTATTGGTGGAAGAAGGAGAAACGGATACTAAACGGGACTGCTTGTTGTTTATAATGACTTTAGCTCTGAATTGCTTAGCTGAGTCTCCGGGTGAAAGGACAAGAATGAAAGACGCTATGAATGCTCTTAAGAAGATTAAAAGATTACTCTTGAACTAA 1185 0.4447 MKMKSLLYPTLLSLLHWHVAVVSAARLNMASDESALVAMREHFNSLDPNNVLASNWSSSTSVCNWIGVTCGSSHRRVTALNLSYMSLDATIPPHLGNLSFLSGLHLPNNSFHGNLPAELAGLRRLSIINLRFNKFTGSIPSWFESLRKLKHLLLAGNSFTGTVPHFLFNMSSLQSLELFKNKFWGPLPSNIFLSPSLQYLYLTYNQISGAIPSAIINSSFLQVIDLDYNNLSGQLPERIFHHLPNLKELHVTSNALSGEKLLSGDDSITQTMNLATIGYMAPEYGLEGRVSRQGDVYSYGILLMETFTQKKPTDEMFVGEFTIKEWVKMSCPDSLLDIVDAKLLVEEGETDTKRDCLLFIMTLALNCLAESPGERTRMKDAMNALKKIKRLLLN* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2875 394 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Amo11g2875 394 Pfam Protein tyrosine and serine/threonine kinase 265 383 IPR001245 GO:0004672|GO:0006468
Amo11g2875 394 SUPERFAMILY Protein kinase-like (PK-like) 269 388 IPR011009 -
Amo11g2875 394 Pfam Leucine rich repeat 195 256 IPR001611 GO:0005515
Amo11g2875 394 Pfam Leucine rich repeat 123 183 IPR001611 GO:0005515
Amo11g2875 394 Gene3D Transferase(Phosphotransferase) domain 1 260 391 - -
Amo11g2875 394 Gene3D Ribonuclease Inhibitor 144 190 IPR032675 -
Amo11g2875 394 Gene3D Ribonuclease Inhibitor 31 143 IPR032675 -
Amo11g2875 394 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 260 389 - -
Amo11g2875 394 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 147 258 - -
Amo11g2875 394 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 6 148 - -
Amo11g2875 394 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 147 258 - -
Amo11g2875 394 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 6 148 - -
Amo11g2875 394 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 260 389 - -
Amo11g2875 394 SUPERFAMILY L domain-like 35 259 - -
Amo11g2875 394 Gene3D Ribonuclease Inhibitor 191 259 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2875 Amo-Chr11 139844347 139845646 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2875 275 389 Receptor kinase-like Gene Family AT5G20480 38.261 8.37e-19 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Amo11g2875 PK_Tyr_Ser-Thr 4.1e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2875 - K13420 ahf:112722956 784.637