Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2870 ATGGCCACTTCTTCGGTTGTGGATGAATTTGATGAATCCATGAAGAAACAGATATCATCCCTTTTGCGGGTTATGAGTTTAGTTAAATCCTTCAAACAGGATAACACGCCTTGCAAAATTGACGAGGGTTTGTTTTTAGGTTCCGTTGGCACTGCAGCTAACAAGAATGCATTGAAAAGCTTGAATGTTACTCACATTCTGACTGTTGCTGGTAAACTGCCACCTACAAATCCTGGGGATTTTGTCTATAAAGTTATCAACGTTGCTGACAGAGATGACGTTGACTTGAAACAATACTTCAATCAGTGCTTTGATTTTATTGAGGATGCCAAAATGCATGGTGGAGGTGTTTTGGTTCACTGTTTTGCAGGAAAATCAAGGAGTGTGACTGTGGTTGTTGCGTATCTGATGAAGACTCGTGGAATGAGCTTATCAGAAGCTCTGCAGCATGTAAAGAGTAGACGACCACTGGCATCTCCAAATCCTGGATTCATCCGTCAGCTGGAAGACTTTGAAAAATCGCTTCAAGTTACAAATTGA 540 0.4111 MATSSVVDEFDESMKKQISSLLRVMSLVKSFKQDNTPCKIDEGLFLGSVGTAANKNALKSLNVTHILTVAGKLPPTNPGDFVYKVINVADRDDVDLKQYFNQCFDFIEDAKMHGGGVLVHCFAGKSRSVTVVVAYLMKTRGMSLSEALQHVKSRRPLASPNPGFIRQLEDFEKSLQVTN* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2870 179 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 9 178 - -
Amo11g2870 179 Coils Coil 174 179 - -
Amo11g2870 179 SMART dsp_5 36 174 IPR020422 GO:0006470|GO:0008138
Amo11g2870 179 CDD DSP 37 170 - -
Amo11g2870 179 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 35 176 IPR029021 -
Amo11g2870 179 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 98 156 IPR000387 GO:0016311|GO:0016791
Amo11g2870 179 Pfam Dual specificity phosphatase, catalytic domain 44 173 IPR000340 GO:0008138|GO:0016311
Amo11g2870 179 PANTHER BNAA01G23680D PROTEIN 9 178 - -
Amo11g2870 179 ProSiteProfiles Dual specificity protein phosphatase domain profile. 36 177 IPR020422 GO:0006470|GO:0008138
Amo11g2870 179 Gene3D Protein tyrosine phosphatase superfamily 28 179 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2870 Amo-Chr11 139755636 139759456 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2870 39 176 Protein tyrosine phosphatase (PTP) family AT3G06110 61.594 6.23e-59 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2870 - - lang:109352945 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g2870 11 139755636 139759456 Amo14g0916 14 13042834 13045536 PCT