Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2860 ATGATGTTGTTACCGTGCGACTACTGCGACTCCAAAACGGCAGTTCTCTTTTGCCGCGCCGACTCTGCCAAGCTCTGCATCTCATGTGACCAGCACGTGCACTCCGCCAACGCCCTCTCACTCAAGCACGTGCGCTCTCAGATTTGCGATAACTGCCGCAACGAACCTGCCGCCGTGCGATGCGCCACCGACAATCTCGTCCTCTGCAACGACTGCGACTCCGACGCACACAACAGTTCCTCCGTCGCCATCTCCCTCCACGCCCGCCACCGCCTCCATGGCTTCTCCGGCTGTCCCCCCGCCCTCGAAATCGCCGCCGCCTTAGGGATCGAGCTCAAGTTCAACTCCAACTGCAACGGCGGCTCCGGTAACACATCTGGATTCGACGAGATTAAAGGTCCGGTTGTGCCGATCGTGAAGGACAAGGTGTATGAGCAGGTGCTGGAGATGGCGAGAAGGAACGGCACGGCGGCGGATCGAAACGAAGAAGTTGAAGCTGGATTGTGCCCTGATACGCCGCCGTGCGTTCAGGGTGCTGAGGAGAAGGGTGAATTGAATACTTGTAACAGTTTTAGTAACAATAAGAGGAGTGCGAATCGTAACAACAATAACAAGAATAACGATGATGAGTTGTTGATGGAACAAACGCCGTTCACTTCTTTGTTGATGCTGCCTTCTGATGGCGGAAGCGTGAAGAGAAATGATTGCGGCAGTGAAGGGGATCTTCTCTGGAATAATTGCAATCCTGCGTATCAGCCTCCTCAGGTATGGGATTTTCAGTTACAAAAATCAAGAGATTGCAGTGAAGCAGGAATGATGTCATTTGATAATCTAGATGAAGCTTCATTAGTGATTCCAAAAACATTGCAAGATGTGCACAATATCAACTCCTCAACAATTGATGATATTCTATCAAGAAATAATCAATCGGATCAGTCGTCTTCAAACCATGTGATGAAGAACGAAGAAAGCAACAAGAAACCTAGAGGTGGATTATCATCAGAGTCCAAATTGGTTGAACCCATAACATACAGTAGCACCAACAATGCCGCATACATGGAGCATCTCGTGAGTGGGAGTGAAAATGTTAGCACCATAAAGGACAAGGTTAACTTTGAAGAGCTGACTAAAAATAGAGGGGATGCCATGTTACGCTACAAGGAAAAGAAGAAAACTCGAAGGTACGATAAGCACATTCGCTATGAATCGAGAAAAGCGAGGGCTGATACGAGAAAAAGGGTGAAAGGACGATTTGTGAAGGCAAGTGATGCAAGTGATGTTCAAAACGAAGAATGA 1296 0.4838 MMLLPCDYCDSKTAVLFCRADSAKLCISCDQHVHSANALSLKHVRSQICDNCRNEPAAVRCATDNLVLCNDCDSDAHNSSSVAISLHARHRLHGFSGCPPALEIAAALGIELKFNSNCNGGSGNTSGFDEIKGPVVPIVKDKVYEQVLEMARRNGTAADRNEEVEAGLCPDTPPCVQGAEEKGELNTCNSFSNNKRSANRNNNNKNNDDELLMEQTPFTSLLMLPSDGGSVKRNDCGSEGDLLWNNCNPAYQPPQVWDFQLQKSRDCSEAGMMSFDNLDEASLVIPKTLQDVHNINSSTIDDILSRNNQSDQSSSNHVMKNEESNKKPRGGLSSESKLVEPITYSSTNNAAYMEHLVSGSENVSTIKDKVNFEELTKNRGDAMLRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKASDASDVQNEE* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2860 431 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 14-LIKE 4 428 - -
Amo11g2860 431 MobiDBLite consensus disorder prediction 404 431 - -
Amo11g2860 431 MobiDBLite consensus disorder prediction 187 209 - -
Amo11g2860 431 Pfam B-box zinc finger 46 90 IPR000315 GO:0008270
Amo11g2860 431 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 428 - -
Amo11g2860 431 ProSiteProfiles Zinc finger B-box type profile. 44 95 IPR000315 GO:0008270
Amo11g2860 431 SMART bboxneu5 1 48 IPR000315 GO:0008270
Amo11g2860 431 SMART bboxneu5 49 86 IPR000315 GO:0008270
Amo11g2860 431 MobiDBLite consensus disorder prediction 300 319 - -
Amo11g2860 431 ProSiteProfiles CCT domain profile. 379 421 IPR010402 GO:0005515
Amo11g2860 431 MobiDBLite consensus disorder prediction 300 338 - -
Amo11g2860 431 CDD Bbox1_BBX-like 5 48 - -
Amo11g2860 431 Pfam CCT motif 379 421 IPR010402 GO:0005515
Amo11g2860 431 ProSiteProfiles Zinc finger B-box type profile. 6 48 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2860 Amo-Chr11 139613370 139618025 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2860 3 423 C2C2-CO-like Transcription Factor Family AT2G33500 37.838 3.78e-73 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Amo11g2860 zf-B_box 7.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2860 - - ahf:112697135 815.068